Parental gene:

BT.22521, ENSBTAG00000016335

Aliases:None
Description:nucleoplasmin-3 [Source:RefSeq peptide;Acc:NP_001192489]
Organism:Cow (Bos taurus)
Coordinates:26:22385931..22388123(-)


>ENSBTAG00000016335
ATGGCAGCTGGCGCAGCGGCCGCCTTGACGTTTTTGGATCAGGAGAGCCGAGTCCGAGCTGGGGGGGTAGGCAGTCTGCA
AGTCCCGGCCCCGGTCACCATGGACAGTTTCTTTTTCGGCTGTGAGCTCTCAGGCCACACTCGCTCTTTCACCTTCAAGG
TAGAAGAAGAGGATGACGCGGAGCATGTGCTGGCTTTGACCATGCTCTGCCTCACCGAGGGGGCCAAAGATGAGTGTAAT
GTGGTAGAAGTCGTGGCACGGAACCATGACCACCAGGAGATCGCAGTCCCTGTGGCCAACCTCAAGTTGTCCTGCCAACC
CATGCTCAGTTTGGATGACTTCCAGCTCCAGCCACCTGTAACCTTCCGCCTGAAGTCAGGTTCTGGCCCTGTGCGCATCA
CTGGGCGGCACCAGATTGTTACTATAAGCAATGATCTTTCTGAGGAAGAGAGCGAAGAAGACGGGAGTGAGGAGGAGGAA
GCTGAGTTGTGTCCTGTCCTTCCTGCCAAGAAGCTGGGGCGCAGGCTCTAA

Library Parental gene expression (RPM)
SRP017611_brain 2 .28 RPM
SRP017611_kidney 2 .61 RPM
SRP017611_liver 3 .32 RPM
ERP005899_muscle 6 .28 RPM
ERP005899_liver 1 .15 RPM
SRP030211_testis 1 .79 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017639 ortholog_one2one 2 retrogenes
retro_amel_1233, retro_amel_90,
Bos taurus ENSBTAG00000015316 within_species_paralog 2 retrogenes
retro_btau_538, retro_btau_56,
Canis familiaris ENSCAFG00000009919 ortholog_one2one 2 retrogenes
retro_cfam_1968, retro_cfam_2064,
Callithrix jacchus ENSCJAG00000017650 ortholog_one2one 2 retrogenes
retro_cjac_2491, retro_cjac_3052,
Cavia porcellus ENSCPOG00000006301 ortholog_one2one 1 retrogene
retro_cpor_1315,
Dasypus novemcinctus ENSDNOG00000018876 ortholog_one2one 1 retrogene
retro_dnov_1279,
Dipodomys ordii ENSDORG00000003491 ortholog_one2one 1 retrogene
retro_dord_577,
Felis catus ENSFCAG00000007178 ortholog_one2one 1 retrogene
retro_fcat_1906,
Homo sapiens ENSG00000107833 ortholog_one2one 1 retrogene
retro_hsap_792,
Macropus eugenii ENSMEUG00000003465 ortholog_one2many 2 retrogenes
retro_meug_20, retro_meug_25,
Microcebus murinus ENSMICG00000011739 ortholog_one2one 1 retrogene
retro_mmur_126,
Myotis lucifugus ENSMLUG00000004961 ortholog_one2one 1 retrogene
retro_mluc_2333,
Macaca mulatta ENSMMUG00000015774 ortholog_one2one 1 retrogene
retro_mmul_1072,
Mus musculus ENSMUSG00000056209 ortholog_one2one 2 retrogenes
retro_mmus_2756, retro_mmus_3479,
Ochotona princeps ENSOPRG00000009229 ortholog_one2one 2 retrogenes
retro_opri_1019, retro_opri_92,
Pongo abelii ENSPPYG00000002589 ortholog_one2one 1 retrogene
retro_pabe_706,
Pan troglodytes ENSPTRG00000002875 ortholog_one2one 1 retrogene
retro_ptro_551,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_1164 72.73 56.25
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Download FASTA sequences of all ENSBTAG00000016335 retrocopies