Parental gene:

Npm3, ENSMUSG00000056209

Aliases:Npm3, Nub1
Description:nucleoplasmin 3 [Source:MGI Symbol;Acc:MGI:894653]
Organism:Mouse (Mus musculus)
Coordinates:19:45747733..45749591(-)


>ENSMUSG00000056209
ATGGCGGCCGGCGCGGCGGCTGCTTTAGCGTTCTTGAACCAAGAGAGCCGAGCCCGAGCTGGGGGCGTCGGGGGCCTGAG
GGTCCCGGCCCCGGTCACAATGGACAGTTTCTTCTTCGGTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGG
TTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATGCTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAAT
GTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCC
CATGCTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCA
CTGGCCGGCATCAGATCGTTTGTATAAACAACGACCTTTCTGAAGAAGAAAGTGATGATGAGAGCGAAGAAGATGAAATT
AAGCTGTGTGGCATCCTTCCTGCCAAGAAGCACAGGGGCAGGCCTTAG

Library Parental gene expression (RPM)
SRP007412_brain 2 .83 RPM
SRP007412_cerebellum 3 .13 RPM
SRP007412_heart 10 .46 RPM
SRP007412_kidney 9 .28 RPM
SRP007412_liver 11 .09 RPM
SRP007412_testis 60 .74 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017639 ortholog_one2many 2 retrogenes
retro_amel_1233, retro_amel_90,
Bos taurus ENSBTAG00000016335 ortholog_one2one 1 retrogene
retro_btau_1164,
Canis familiaris ENSCAFG00000009919 ortholog_one2one 2 retrogenes
retro_cfam_1968, retro_cfam_2064,
Callithrix jacchus ENSCJAG00000017650 ortholog_one2one 2 retrogenes
retro_cjac_2491, retro_cjac_3052,
Cavia porcellus ENSCPOG00000006301 ortholog_one2one 1 retrogene
retro_cpor_1315,
Dasypus novemcinctus ENSDNOG00000018876 ortholog_one2one 1 retrogene
retro_dnov_1279,
Dipodomys ordii ENSDORG00000003491 ortholog_one2one 1 retrogene
retro_dord_577,
Felis catus ENSFCAG00000007178 ortholog_one2many 1 retrogene
retro_fcat_1906,
Homo sapiens ENSG00000107833 ortholog_one2one 1 retrogene
retro_hsap_792,
Macropus eugenii ENSMEUG00000003465 ortholog_one2many 2 retrogenes
retro_meug_20, retro_meug_25,
Microcebus murinus ENSMICG00000011739 ortholog_one2one 1 retrogene
retro_mmur_126,
Myotis lucifugus ENSMLUG00000004961 ortholog_one2one 1 retrogene
retro_mluc_2333,
Macaca mulatta ENSMMUG00000015774 ortholog_one2one 1 retrogene
retro_mmul_1072,
Mustela putorius furo ENSMPUG00000016894 ortholog_one2one 2 retrogenes
retro_mputfur_750, retro_mputfur_759,
Mus musculus ENSMUSG00000057113 within_species_paralog 5 retrogenes
retro_mmus_1301, retro_mmus_1798, retro_mmus_3131, retro_mmus_539, retro_mmus_550,
Ochotona princeps ENSOPRG00000009229 ortholog_one2one 2 retrogenes
retro_opri_1019, retro_opri_92,
Pongo abelii ENSPPYG00000002589 ortholog_one2one 1 retrogene
retro_pabe_706,
Pan troglodytes ENSPTRG00000002875 ortholog_one2one 1 retrogene
retro_ptro_551,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_2756 98.29 100.00
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2. retro_mmus_3479 66.04 60.57
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Download FASTA sequences of all ENSMUSG00000056209 retrocopies