RetrogeneDB ID: | retro_cfam_2064 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | X:39412672..39413017(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NPM3 | ||
Ensembl ID: | ENSCAFG00000009919 | ||
Aliases: | None | ||
Description: | nucleophosmin/nucleoplasmin 3 [Source:HGNC Symbol;Acc:7931] |
Percent Identity: | 79.13 % |
Parental protein coverage: | 56.93 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | VTMDSFFFGCELSGHTRSFTFKVEEEDDAEHVLALTMLCLTEGAKDECNVVEVVARNHDHQEIAVPVANL |
VTMDSF.FGC.LS.HTRSFT.KVEEED..EH.LAL.MLCLT..A..ECNVVEV.AR.H.HQEIAVPVANL | |
Retrocopy | VTMDSFSFGC*LSSHTRSFTLKVEEEDEVEHLLALAMLCLTKRAEEECNVVEVMARKHYHQEIAVPVANL |
Parental | KLSCQPMLSLDDFQLQPPVTFRLKSGSGPVRITGRHQIVTISNDV |
KLSCQ.M.SLDD.QLQPPVTF.LKSGSGP..I.G.HQIV.ISNDV | |
Retrocopy | KLSCQFMFSLDDLQLQPPVTFCLKSGSGPM*IAGQHQIVSISNDV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 15 .79 RPM |
SRP017611_brain | 0 .00 RPM | 6 .27 RPM |
SRP017611_kidney | 0 .00 RPM | 41 .87 RPM |
SRP017611_liver | 0 .00 RPM | 14 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017639 | 2 retrocopies | |
Bos taurus | ENSBTAG00000016335 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000009919 | 2 retrocopies |
retro_cfam_1968, retro_cfam_2064 ,
|
Canis familiaris | ENSCAFG00000016912 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000017650 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000006301 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000018876 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000003491 | 1 retrocopy | |
Felis catus | ENSFCAG00000007178 | 1 retrocopy | |
Homo sapiens | ENSG00000107833 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000003465 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000011739 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000004961 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015774 | 1 retrocopy | |
Mus musculus | ENSMUSG00000056209 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000009229 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000002589 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000002875 | 1 retrocopy |