Parental gene: | SHFM1, ENSCAFG00000002179 |
| Aliases: | None |
| Description: | split hand/foot malformation (ectrodactyly) type 1 [Source:HGNC Symbol;Acc:10845] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 14:21766208..21796756(-) |
>ENSCAFG00000002179
ATGCTCCTCTTCAAAGCCATTCTTGTTCCCATAGAAACCAATGTGAGATCCTGGAAAACAAGGCTTTTGGCGCGGAGCGT
CGCCATGTCAGAGAAGAAGCAGCCGGTAGATTTGGGTCTCCTGGAGGAAGACGACGAGTTCGAGGAGTTCCCTGCCGAAG
ACTGGGCTGGTTTAGATGAAGATGAAGATGCACATGTCTGGGAGGATAATTGGGATGATGACAATGTAGAGGATGACTTC
TCCAATCAGTTACGAGCTGAACTAGAGAAACATGGTTATAAGATGGAGACCTCATAG
ATGCTCCTCTTCAAAGCCATTCTTGTTCCCATAGAAACCAATGTGAGATCCTGGAAAACAAGGCTTTTGGCGCGGAGCGT
CGCCATGTCAGAGAAGAAGCAGCCGGTAGATTTGGGTCTCCTGGAGGAAGACGACGAGTTCGAGGAGTTCCCTGCCGAAG
ACTGGGCTGGTTTAGATGAAGATGAAGATGCACATGTCTGGGAGGATAATTGGGATGATGACAATGTAGAGGATGACTTC
TCCAATCAGTTACGAGCTGAACTAGAGAAACATGGTTATAAGATGGAGACCTCATAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 12 .23 RPM |
| SRP017611_kidney | 68 .48 RPM |
| SRP017611_liver | 12 .40 RPM |
| SRP012049_cerebellum | 33 .64 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Cavia porcellus | ENSCPOG00000010402 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000019778 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000023254 | possible_ortholog | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000014208 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000026246 | possible_ortholog | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_1174 | 93.24 | 75.51 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCAFG00000002179 retrocopies