Parental gene:

PRELID1, ENSCAFG00000016443

Aliases:None
Description:PRELI domain containing 1 [Source:HGNC Symbol;Acc:30255]
Organism:Dog (Canis familiaris)
Coordinates:4:36051955..36054915(-)


>ENSCAFG00000016443
ATGGTGAAGTATTTCCTGGGCCAGAGCGTGCTCCGGAGTTCCTGGGACCAAGTGTTCGCTGCCTTCTGGCAGCGGTACCC
GAATCCCTATAGCAAACATGTCTTGACGGAAGACATAGTGCACCGGGAGGTGACCCCTGACCAGAAACTCCTGTCCCGGC
GTCTCCTGACCAAGACCAACAGGATGCCTCGCTGGGCGGAGCGACTCTTTCCTGCCAATGTTGCTCACTCGGTGTACATC
CTGGAGGATTCTATTGTGGACCCACAGAACCAGACCATGACCACCTTCACCTGGAACATCAACCACGCCCGGCTGATGGT
GGTGGAGGAACGATGTGTTTACTGTGTGAACTCTGATAACAGTGGCTGGACCGAAATCCGCCGGGAAGCCTGGGTCTCCT
CTAGCTTATTTGGTGTCTCCAGAGCTGTCCAGGAATTTGGTCTTGCCCGGTTCAAAAGCAACGTGACCAAGACAATGAAG
GGCTTTGAATACATCTTGGCCAAGCTGCAAGGTGAGGCCCCTTCCAAAACCCTTGTTGAGACAGCCAAGGAAGCCAAGGA
GAAGGCAAAGGAGACGGCACTGGCAGCTACAGAGAAGGCCAAGGACCTTGCCAGCAAGGCCGCCACCAAGCAGCAGCAGC
AGCAGCAGCACTTTGTGTAG

Library Parental gene expression (RPM)
SRP012049_cerebellum 26 .25 RPM
SRP017611_brain 18 .66 RPM
SRP017611_kidney 88 .42 RPM
SRP017611_liver 58 .66 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000005009 ortholog_one2one 2 retrogenes
retro_btau_1727, retro_btau_962,
Callithrix jacchus ENSCJAG00000006953 ortholog_one2many 5 retrogenes
retro_cjac_1131, retro_cjac_1689, retro_cjac_2401, retro_cjac_3359, retro_cjac_835,
Homo sapiens ENSG00000169230 ortholog_one2one 7 retrogenes
retro_hsap_1550, retro_hsap_2269, retro_hsap_249, retro_hsap_302, retro_hsap_3518, retro_hsap_3565, retro_hsap_579,
Gorilla gorilla ENSGGOG00000011762 ortholog_one2many 3 retrogenes
retro_ggor_2404, retro_ggor_302, retro_ggor_9,
Macropus eugenii ENSMEUG00000001738 ortholog_one2one 12 retrogenes
retro_meug_1194, retro_meug_1541, retro_meug_1618, retro_meug_1725, retro_meug_1726, retro_meug_2054, retro_meug_274, retro_meug_666, retro_meug_681, retro_meug_854, retro_meug_895, retro_meug_918,
Myotis lucifugus ENSMLUG00000007008 ortholog_one2many 2 retrogenes
retro_mluc_239, retro_mluc_64,
Macaca mulatta ENSMMUG00000009046 ortholog_one2one 2 retrogenes
retro_mmul_1822, retro_mmul_2457,
Monodelphis domestica ENSMODG00000004804 ortholog_one2many 3 retrogenes
retro_mdom_1529, retro_mdom_221, retro_mdom_596,
Mustela putorius furo ENSMPUG00000012226 ortholog_one2one 1 retrogene
retro_mputfur_579,
Nomascus leucogenys ENSNLEG00000012714 ortholog_one2one 5 retrogenes
retro_nleu_1382, retro_nleu_2395, retro_nleu_2400, retro_nleu_803, retro_nleu_857,
Otolemur garnettii ENSOGAG00000011455 possible_ortholog 4 retrogenes
retro_ogar_1352, retro_ogar_2025, retro_ogar_3006, retro_ogar_665,
Pongo abelii ENSPPYG00000016086 ortholog_one2one 7 retrogenes
retro_pabe_1283, retro_pabe_1696, retro_pabe_1699, retro_pabe_2907, retro_pabe_377, retro_pabe_409, retro_pabe_608,
Sus scrofa ENSSSCG00000014042 ortholog_one2one 4 retrogenes
retro_sscr_372, retro_sscr_794, retro_sscr_795, retro_sscr_811,
Tupaia belangeri ENSTBEG00000006445 ortholog_one2one 1 retrogene
retro_tbel_3855,
Tursiops truncatus ENSTTRG00000009571 ortholog_one2one 1 retrogene
retro_ttru_1886,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_349 81.90 100.00
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2. retro_cfam_2055 87.62 95.43
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Download FASTA sequences of all ENSCAFG00000016443 retrocopies