RetrogeneDB ID: | retro_ggor_302 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 1:144646469..144646943(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000028487 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSGGOG00000011762 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66.46 % |
Parental protein coverage: | 72.6 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 5 |
Parental | LTKTNR-MPRWAERLFPANVAHSVYILEDSIVDPQNQT-MTT-FTWNINHARL-MVVEERCVYCVNSDNS |
LTKT.R.MPRWAE.LFPA..A.SV.ILE.S.V.P..QT.MTT..TWNINH..L..VVEE...Y..NSD.S | |
Retrocopy | LTKTSR<MPRWAEPLFPASAARSVSILEHSTVKPRKQT<MTT<LTWNINHTQL<VVVEEPRTYSGNSDSS |
Parental | GWTEIRREAWVSSSLFG-VSRAVQEFGLARFKSNVTKTMKGFEYILAKLQGEAPSKTLVETAKEAKEKAK |
.WT.I...AWVS.SLF...SRAVQEFGLA.FK.NV..T.KGFEYILAKL...APSKTL.ETAK..KEKA. | |
Retrocopy | AWTQIHWKAWVSCSLFN>ISRAVQEFGLAQFKTNVITTRKGFEYILAKLHSVAPSKTLIETAKGPKEKAE |
Parental | ETALAATEKAKDLASKAATKKQQQ |
ETAL.A.EKAKD.A...A.K.Q.Q | |
Retrocopy | ETALEAAEKAKDPAMQGAPKQQLQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 14 .96 RPM |
SRP007412_cerebellum | 0 .00 RPM | 9 .02 RPM |
SRP007412_heart | 0 .09 RPM | 6 .10 RPM |
SRP007412_kidney | 0 .00 RPM | 42 .77 RPM |
SRP007412_liver | 0 .00 RPM | 20 .76 RPM |
SRP007412_testis | 0 .00 RPM | 6 .63 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_249 |
Pongo abelii | retro_pabe_409 |