RetrogeneDB ID:

retro_ogar_1352

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873543.1:12413151..12413808(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000011455
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_1352
ATGGTGATGTATTTCCTGGGCCAGAGCGTGCTCCGGAGTTGGTGGGACCAAGTGTTTGCTGCCTTTTGGAGCAGTACCTG
AATCCTTATAGCAAACATGTCTTGATGGAAGACACAGTACATCGGGAGGTGACCCCTGACCAGAAGCTCCTGTACGCACG
GCGACTCCTGACCAAGACCAACAGGATGCCCCGCCGGGCTGAGGGACTGTTTCCTGCCAATGTTGCTCACTCAGGGTACA
TCCTGGAGGACTCTATTGTGGACCCACAGAATCAGACCATGGCCACCTTCACCTGGAACATCAACCACGCCCACTGATGT
TGGTGGAGGAACAATGTGTTTACTGTGTGAACTCGGACAACAGTGGCTGGACTGAAATCCCTCGAGAAGCCTGGGTCTCC
TCTAGCTCATGTGGTGTCTCCAGGGCTGTCTAGGAATTTGGTCTTGTCCAGTTCAAAGGCAATGTGACCAAGACTCTGAA
AGGTTTGAATCCATCTTGACCAAGCTGCTGGGTGAGGCCCCTTCCAAAACACTTGTTGAGACCGCCAAAGAAGCCAAAGA
GAAGGCAAAGGAGACAGCACTGGCAGCCACGGAGAAGGCCAAGGACCTAGCCAACAAGGCAGCCACTGAGAAGCAACAGC
AGCAGCAACGATTTGTG

ORF - retro_ogar_1352 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 85.2 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalMVKYFLGQSVLRSSWDQVFAAFW-QRYPNPYSKHVLTEDIVHREVTPDQKLL-SRRLLTKTNRMPRWAER
MV.YFLGQSVLRS.WDQVFAAFW...Y.NPYSKHVL.ED.VHREVTPDQKLL..RRLLTKTNRMPR.AE.
RetrocopyMVMYFLGQSVLRSWWDQVFAAFW<EQYLNPYSKHVLMEDTVHREVTPDQKLLYARRLLTKTNRMPRRAEG
ParentalLFPANVAHSVYILEDSIVDPQNQTMTTFTWNINHAR-LMVVEERCVYYVNSDNSGWTEIRREAWVSSSLF
LFPANVAHS.YILEDSIVDPQNQTM.TFTWNINHA..LM.VEE.CVY.VNSDNSGWTEI.REAWVSSS..
RetrocopyLFPANVAHSGYILEDSIVDPQNQTMATFTWNINHAH<LMLVEEQCVYCVNSDNSGWTEIPREAWVSSSSC
ParentalGVSRAVQEFGLARFKSNVTKTMKG-FEYILAKLQGEAPSKTLVETAKEAKEKAKETALAATEKAKDLANK
GVSRAV.EFGL..FK.NVTKT.KG.FE.IL.KL.GEAPSKTLVETAKEAKEKAKETALAATEKAKDLANK
RetrocopyGVSRAV*EFGLVQFKGNVTKTLKG<FESILTKLLGEAPSKTLVETAKEAKEKAKETALAATEKAKDLANK
ParentalAATKKQQQQQQFV
AAT.KQQQQQ.FV
RetrocopyAATEKQQQQQRFV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_1352 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 23 parental genes, and 81 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000050092 retrocopies
Canis familiaris ENSCAFG000000164432 retrocopies
Choloepus hoffmanni ENSCHOG000000022511 retrocopy
Callithrix jacchus ENSCJAG000000069535 retrocopies
Cavia porcellus ENSCPOG000000257881 retrocopy
Dasypus novemcinctus ENSDNOG000000175501 retrocopy
Equus caballus ENSECAG000000234601 retrocopy
Homo sapiens ENSG000001692307 retrocopies
Gorilla gorilla ENSGGOG000000117623 retrocopies
Loxodonta africana ENSLAFG000000054591 retrocopy
Macropus eugenii ENSMEUG0000000173812 retrocopies
Myotis lucifugus ENSMLUG000000070082 retrocopies
Macaca mulatta ENSMMUG000000090462 retrocopies
Monodelphis domestica ENSMODG000000048043 retrocopies
Mustela putorius furoENSMPUG000000122261 retrocopy
Mus musculus ENSMUSG000000214867 retrocopies
Nomascus leucogenys ENSNLEG000000127145 retrocopies
Otolemur garnettii ENSOGAG00000011455 4 retrocopies
Pongo abelii ENSPPYG000000160867 retrocopies
Rattus norvegicus ENSRNOG000000164108 retrocopies
Sus scrofa ENSSSCG000000140424 retrocopies
Tupaia belangeri ENSTBEG000000064451 retrocopy
Tursiops truncatus ENSTTRG000000095711 retrocopy



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