Parental gene:

SNX5, ENSCJAG00000004947

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:5:23552089..23577690(-)


>ENSCJAG00000004947
GTGGGAGAGTGTCTGTGGCTTCGCGTCCCTGTCGCGGCCCTGCGGTCGGCGGACTCCTATTGGAGCGGAGCAAGGCTGAG
ATCTGTATCCGTGGACCTGAATGTTGATCCCTCGCTTCAAATTGACATACCAGATGCGCTCAGTGAGAGAGATAGGGTCA
AATTTACAGTGCATACAAAGACCACACTGCCCACGTTTCAGAGCCCAGAGTTTTCTGTTACAAGGCAACATGAAGACTTC
GTGTGGCTACATGACACTCTTATTGAAACAACAGACTACGCCGGGCTTATTATTCCGCCTGCTCCTACAAAGCCTGACTT
CGATGGTCCTCGAGAGAAGATGCAGAAACTAGGAGAAGGTGAAGGGTCTATGACCAAAGAGGAATTTGCCAAGATGAAAC
AAGAACTGGAAGCTGAATATCTTGCTGTTTTTAAGAAGACTGTGTCCTCCCATGAAGTCTTTCTTCAGCGGCTTGCTTCT
CACCCTGTTCTCAGTAAAGATCGCAACTTTCATGTTTTCCTGGAATATGATCAGGATCTAAGTGTTAGGCGGAAAAATAC
TAAAGAGATGTTTGGTGGCTTCTTCAAAAGCGTGGTGAAAAGTGCTGACGAAGTCCTTTTTACTGGAGTTAAGGAGGTAG
ATGACTTCTTTGAGCAAGAGAAGAACTTCCTTATTAACTATTACAATAGGATCAAAGATTCTTGTGTGAAAGCTGACAAA
ATGACCAGATCTCATAAAAATGTTGCCGATGACTACATCCACACTGCAGCCTGCTTACATAGCCTGGCTTTAGAAGAGCC
CACAGTCATCAAAAATTTCACTCTTATGAAGGTTGCTGAGCTATTTGAAAAACTTAGGAAAGTAGAGGGTCGAGTCTCAT
CAGATGAAGATTTGAAGCTAACAGAGCTCCTCAGATACTACATGCTTAACATTGAAGCTGCTAAGGATCTCTTATACAGA
CGCACCAAAGCCCTCATTGACTATGAGAACTCAAACAAAGCTCTGGATAAGGCCCGGTTAAAGAGCAAAGATGTCAAGTT
GGCTGAGGCACACCAGCAGGAGTGCTGCCAGAAATTTGAACAGCTTTCTGAATCTGCAAAAGTAGAACTGATAAATTTCA
AACGGAAGAGAGTGGCAGCATTTAGAAAGAATCTAGTTGAAATGTCTGAACTGGAAATAAAACATGCCAAGAACAATGTC
TCCCTTTTGCAGAGCTGTATTGACTTGTTCAAGAATAACTGA

Library Parental gene expression (RPM)
SRP051959_spleen 54 .01 RPM
SRP051959_skeletal_muscle 14 .54 RPM
SRP051959_lymph_node 43 .83 RPM
SRP051959_lung 36 .78 RPM
SRP051959_liver 45 .81 RPM
SRP051959_kidney 59 .53 RPM
SRP051959_heart 19 .33 RPM
SRP051959_colon 32 .28 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000010128 ortholog_one2one 2 retrogenes
retro_chof_1478, retro_chof_2166,
Homo sapiens ENSG00000089006 ortholog_one2one 2 retrogenes
retro_hsap_1051, retro_hsap_2945,
Gorilla gorilla ENSGGOG00000008953 ortholog_one2one 1 retrogene
retro_ggor_829,
Macropus eugenii ENSMEUG00000009110 ortholog_one2one 1 retrogene
retro_meug_475,
Macaca mulatta ENSMMUG00000011476 ortholog_one2one 2 retrogenes
retro_mmul_1746, retro_mmul_832,
Nomascus leucogenys ENSNLEG00000009714 ortholog_one2one 1 retrogene
retro_nleu_2071,
Oryctolagus cuniculus ENSOCUG00000017072 ortholog_one2one 1 retrogene
retro_ocun_1323,
Otolemur garnettii ENSOGAG00000006157 ortholog_one2many 1 retrogene
retro_ogar_1203,
Pongo abelii ENSPPYG00000010730 ortholog_one2one 2 retrogenes
retro_pabe_2442, retro_pabe_877,
Pan troglodytes ENSPTRG00000013278 ortholog_one2one 2 retrogenes
retro_ptro_2052, retro_ptro_717,
Sus scrofa ENSSSCG00000007088 ortholog_one2one 1 retrogene
retro_sscr_593,
Ictidomys tridecemlineatus ENSSTOG00000015416 ortholog_one2many 1 retrogene
retro_itri_1176,
Tursiops truncatus ENSTTRG00000016432 ortholog_one2one 1 retrogene
retro_ttru_410,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2192 84.51 52.59
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2. retro_cjac_3243 83.96 78.47
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Download FASTA sequences of all ENSCJAG00000004947 retrocopies