Parental gene:

SNX5, ENSGGOG00000008953

Aliases:None
Description:None
Organism:Gorilla (Gorilla gorilla)
Coordinates:20:18367121..18394574(-)


>ENSGGOG00000008953
ATGGCCGCGGTTCCCGAGTTGCTGCAGCAGCAGGAGGAGGACCGCAGCAAGCTGAGATCTGTATCTGTGGACCTGAATGT
TGATCCCTCACTTCAGATTGACATACCTGATGCGCTCAGTGAGAGAGACAAAGTCAAATTTACAGTGCACACAAAGACCA
CACTGCCCACGTTTCAGAGCCCAGAGTTTTCTGTTACAAGGCAACATGAAGACTTTGTGTGGCTACATGACACTCTTATT
GAAACAACAGACTATGCTGGGCTTATTATTCCACCTGCTCCTACGAAGCCCGACTTTGATGGTCCTCGAGAGAAGATGCA
GAAACTGGGAGAAGGTGAAGGGTCTATGACCAAAGAAGAATTTGCCAAGATGAAACAAGAACTGGAAGCTGAGTATCTCG
CTGTGTTTAAGAAGACCGTGTCCTCCCATGAAGTCTTTCTTCAGCGGCTTTCTTCTCACCCTGTTCTCAGTAAAGATCGC
AACTTTCATGTTTTCCTGGAATATGATCAGGATCTCAGTGTTAGGCGGAAAAATACTAAAGAGATGTTTGGTGGCTTCTT
CAAAAGTGTGGTGAAAAGTGCTGATGAAGTCCTTTTTACTGGAGTTAAGGAGGTAGATGACTTCTTTGAGCAAGAGAAGA
ACTTCCTTATTAACTATTACAATAGGATCAAAGATTCTTGTGTGAAAGCTGACAAAATGACCAGATCTCATAAAAATGTT
GCCGATGACTATATCCACACCGCAGCCTGCTTACATAGCCTGGCTTTAGAAGAGCCCACAGTCATCAAAAAGTACCTATT
GAAGGTTGCTGAGCTATTTGAAAAACTAAGGAAAGTAGAGGGTCGAGTTTCATCAGATGAAGATTTGAAGCTAACAGAGC
TCCTCCGATACTACATGCTCAACATTGAAGCTGCTAAGGATCTCTTATACAGACGCACCAAAGCCCTCATTGACTATGAG
AACTCAAACAAAGCTCTGGATAAGGCCCGGTTAAAGAGCAAAGACGTCAAGTTGGCTGAGGCACACCAGCAGGAGTGCTG
CCAGAAATTTGAACAACTTTCCGAATCTGCAAAAGAAGAACTGATAAATTTCAAACGGAAGAGAATGGCAGCATTTAGAA
AGAATCTAATTGAAATGTCTGAACTGGAAATAAAACATGCCAGGAACAATGTCTCCCTTTTGCAGAGCTGTATTGACTTG
TTCAAGAATAACTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 35 .20 RPM
SRP007412_cerebellum 24 .70 RPM
SRP007412_heart 10 .32 RPM
SRP007412_kidney 201 .34 RPM
SRP007412_liver 63 .12 RPM
SRP007412_testis 53 .87 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000010128 ortholog_one2one 2 retrogenes
retro_chof_1478, retro_chof_2166,
Callithrix jacchus ENSCJAG00000004947 ortholog_one2one 2 retrogenes
retro_cjac_2192, retro_cjac_3243,
Homo sapiens ENSG00000089006 ortholog_one2one 2 retrogenes
retro_hsap_1051, retro_hsap_2945,
Gorilla gorilla ENSGGOG00000010801 within_species_paralog 1 retrogene
retro_ggor_1473,
Macropus eugenii ENSMEUG00000009110 ortholog_one2one 1 retrogene
retro_meug_475,
Macaca mulatta ENSMMUG00000011476 ortholog_one2one 2 retrogenes
retro_mmul_1746, retro_mmul_832,
Nomascus leucogenys ENSNLEG00000009714 ortholog_one2one 1 retrogene
retro_nleu_2071,
Oryctolagus cuniculus ENSOCUG00000017072 ortholog_one2one 1 retrogene
retro_ocun_1323,
Otolemur garnettii ENSOGAG00000006157 ortholog_one2many 1 retrogene
retro_ogar_1203,
Pongo abelii ENSPPYG00000010730 ortholog_one2one 2 retrogenes
retro_pabe_2442, retro_pabe_877,
Pan troglodytes ENSPTRG00000013278 ortholog_one2one 2 retrogenes
retro_ptro_2052, retro_ptro_717,
Sus scrofa ENSSSCG00000007088 ortholog_one2one 1 retrogene
retro_sscr_593,
Ictidomys tridecemlineatus ENSSTOG00000015416 ortholog_one2many 1 retrogene
retro_itri_1176,
Tursiops truncatus ENSTTRG00000016432 ortholog_one2one 1 retrogene
retro_ttru_410,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ggor_829 87.50 78.47
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Download FASTA sequences of all ENSGGOG00000008953 retrocopies