Parental gene: | SNX5, ENSG00000089006 |
| Aliases: | None |
| Description: | sorting nexin 5 [Source:HGNC Symbol;Acc:14969] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 20:17922240..17949623(-) |
>ENSG00000089006
ATGGCCGCGGTTCCCGAGTTGCTGCAGCAGCAGGAGGAGGACCGCAGCAAGCTGAGATCTGTATCTGTGGACCTGAATGT
TGATCCCTCGCTTCAGATTGACATACCTGATGCGCTCAGTGAGAGAGACAAAGTCAAATTTACAGTGCACACAAAGACCA
CACTGCCCACGTTTCAGAGCCCAGAGTTTTCTGTTACAAGGCAACATGAAGACTTTGTGTGGCTACATGACACTCTTATT
GAAACAACAGACTATGCTGGGCTTATTATTCCACCTGCTCCTACGAAGCCCGACTTTGATGGTCCTCGAGAGAAGATGCA
GAAACTGGGAGAAGGTGAAGGGTCTATGACCAAAGAAGAATTTGCCAAGATGAAACAAGAACTGGAAGCTGAGTATCTCG
CTGTGTTTAAGAAGACTGTGTCCTCCCATGAAGTCTTTCTTCAGCGGCTTTCTTCTCACCCTGTTCTCAGTAAAGATCGC
AACTTTCATGTTTTCCTGGAATATGATCAGGATCTAAGTGTTAGGCGGAAAAATACTAAAGAGATGTTTGGTGGCTTCTT
CAAAAGTGTGGTGAAAAGTGCTGATGAAGTCCTTTTTACTGGAGTTAAGGAGGTAGATGACTTCTTTGAGCAAGAGAAGA
ACTTCCTTATTAACTATTACAATAGGATCAAAGATTCTTGTGTGAAAGCTGACAAAATGACCAGATCTCATAAAAATGTT
GCCGATGACTATATCCACACCGCAGCCTGCTTACATAGCCTGGCTTTAGAAGAGCCCACAGTCATCAAAAAGTACCTATT
GAAGGTTGCTGAGCTATTTGAAAAACTAAGGAAAGTAGAGGGTCGAGTTTCATCAGATGAAGATTTGAAGCTAACAGAGC
TCCTCCGATACTACATGCTCAACATTGAAGCTGCTAAGGATCTCTTATACAGACGCACCAAAGCCCTCATTGACTATGAG
AACTCAAACAAAGCTCTGGATAAGGCCCGGTTAAAGAGCAAAGACGTCAAGTTGGCTGAGGCACACCAGCAGGAGTGCTG
CCAGAAATTTGAACAACTTTCCGAATCTGCAAAAGAAGAACTGATAAATTTCAAACGGAAGAGAGTGGCAGCATTTAGAA
AGAATCTAATTGAAATGTCTGAACTGGAAATAAAACATGCCAGGAACAATGTCTCCCTTTTGCAGAGCTGTATTGACTTG
TTCAAGAATAACTGA
ATGGCCGCGGTTCCCGAGTTGCTGCAGCAGCAGGAGGAGGACCGCAGCAAGCTGAGATCTGTATCTGTGGACCTGAATGT
TGATCCCTCGCTTCAGATTGACATACCTGATGCGCTCAGTGAGAGAGACAAAGTCAAATTTACAGTGCACACAAAGACCA
CACTGCCCACGTTTCAGAGCCCAGAGTTTTCTGTTACAAGGCAACATGAAGACTTTGTGTGGCTACATGACACTCTTATT
GAAACAACAGACTATGCTGGGCTTATTATTCCACCTGCTCCTACGAAGCCCGACTTTGATGGTCCTCGAGAGAAGATGCA
GAAACTGGGAGAAGGTGAAGGGTCTATGACCAAAGAAGAATTTGCCAAGATGAAACAAGAACTGGAAGCTGAGTATCTCG
CTGTGTTTAAGAAGACTGTGTCCTCCCATGAAGTCTTTCTTCAGCGGCTTTCTTCTCACCCTGTTCTCAGTAAAGATCGC
AACTTTCATGTTTTCCTGGAATATGATCAGGATCTAAGTGTTAGGCGGAAAAATACTAAAGAGATGTTTGGTGGCTTCTT
CAAAAGTGTGGTGAAAAGTGCTGATGAAGTCCTTTTTACTGGAGTTAAGGAGGTAGATGACTTCTTTGAGCAAGAGAAGA
ACTTCCTTATTAACTATTACAATAGGATCAAAGATTCTTGTGTGAAAGCTGACAAAATGACCAGATCTCATAAAAATGTT
GCCGATGACTATATCCACACCGCAGCCTGCTTACATAGCCTGGCTTTAGAAGAGCCCACAGTCATCAAAAAGTACCTATT
GAAGGTTGCTGAGCTATTTGAAAAACTAAGGAAAGTAGAGGGTCGAGTTTCATCAGATGAAGATTTGAAGCTAACAGAGC
TCCTCCGATACTACATGCTCAACATTGAAGCTGCTAAGGATCTCTTATACAGACGCACCAAAGCCCTCATTGACTATGAG
AACTCAAACAAAGCTCTGGATAAGGCCCGGTTAAAGAGCAAAGACGTCAAGTTGGCTGAGGCACACCAGCAGGAGTGCTG
CCAGAAATTTGAACAACTTTCCGAATCTGCAAAAGAAGAACTGATAAATTTCAAACGGAAGAGAGTGGCAGCATTTAGAA
AGAATCTAATTGAAATGTCTGAACTGGAAATAAAACATGCCAGGAACAATGTCTCCCTTTTGCAGAGCTGTATTGACTTG
TTCAAGAATAACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 51 .92 RPM |
| bodymap2_lung | 69 .97 RPM |
| bodymap2_breast | 98 .99 RPM |
| bodymap2_adipose | 70 .67 RPM |
| bodymap2_adrenal | 123 .27 RPM |
| bodymap2_skeletal_muscle | 57 .29 RPM |
| bodymap2_thyroid | 257 .80 RPM |
| bodymap2_prostate | 81 .21 RPM |
| bodymap2_colon | 68 .76 RPM |
| bodymap2_testis | 88 .89 RPM |
| bodymap2_brain | 65 .02 RPM |
| bodymap2_heart | 33 .16 RPM |
| bodymap2_white_blood_cells | 87 .37 RPM |
| bodymap2_lymph_node | 94 .84 RPM |
| bodymap2_ovary | 138 .18 RPM |
| bodymap2_kidney | 118 .52 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000010128 | ortholog_one2one | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000004947 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000172803 | within_species_paralog | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000008953 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000009110 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000011476 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000009714 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000017072 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000006157 | ortholog_one2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000010730 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000013278 | ortholog_one2one | 2 retrogenes | |
| Sus scrofa | ENSSSCG00000007088 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000015416 | ortholog_one2many | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000016432 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_1051 | 88.07 | 80.20 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_hsap_2945 | 92.31 | 57.67 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000089006 retrocopies