Parental gene:

SNX5, ENSOCUG00000017072

Aliases:None
Description:sorting nexin 5 [Source:HGNC Symbol;Acc:14969]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:4:18253960..18277547(+)


>ENSOCUG00000017072
ATGGCCGCGGTTCCCGAGTTGCTGCAGCAGCAGGAGGAGGACCGCAGTAAGCTGAGATCTGTATCTGTGGACCTGAATAT
TGATCCTTCACTTCAGATCGACATACCTGATGCACTCAGCGAGAGAGATAAGGTCAAATTTACAGTGCACACCAAGACCA
CACTGCCCACGTTTCAGAGCCCAGAGTTTTCTGTTACAAGGCAGCATGAAGACTTTGTGTGGCTACATGACACACTCACT
GAAACAACAGAGTATGCTGGGCTTATTATTCCACCTGCACCTACAAAGCCTGACTTTGATGGCCCTCGTGAGAAGATGCA
GAAACTTGGAGAGGGTGAAGGGTCTATGACCAAGGAAGAATTTGCCAAGATGAAACAAGAACTGGAGGCTGAGTATCTCG
CTGTCTTTAAGAAGACTGTGTCCTCCCATGAAGTCTTTCTTCAACGGCTTTCTTCTCATCCTGTTCTCAGTAAAGATCGC
AACTTTCATGTTTTCCTGGAATATGATCAGGATCTAAGTGTCAGGCGGAAAAATACCAAAGAGATGTTCGGTGGCTTTTT
CAAAAGTGTGGTGAAAAGTGCTGATGAAGTCCTTTTTTCTGGAGTTAAGGAGGTAGATGACTTCTTTGAGCAAGAGAAGA
CCTTCCTTATTAACTACTACAACAGGATCAAGGACTCCTGTGGGAAAGCTGACAAGATGACCAGGTCTCATAAAAATGTT
GCAGACGACTATATCCACACTGCAGCTTGCTTGCACAGCCTGGCTTTGGAAGAGCCCACAGTCATCAAAAAGTACCTGTT
GAAGGTTGCTGAGCTGTTTGAAAAACTTAGGAAAGTAGAGGGTCGAGTCTCATCAGATGAAGATTTAAAGCTCACAGAAC
TCCTCCGTTACTACATGCTCAACATAGAGGCCGCAAAGGACCTCTTATACAGACGTACTAAGGCCCTCATTGACTATGAG
AACTCAAACAAAGCTCTGGATAAAGCCCGGCTGAAAAGCAGAGATGTTAAGTTGGCAGAGGCACACCAGCAGGAATGCTG
CCAGAAATTTGAACAGCTTTCTGAGTCTGCTAAAGAAGAACTGGTAAATTTCAAGCGGAAGAGAGTGGCAGCATTTAGAA
AGAATCTAATTGAAATGTCTGAACTGGAAATAAAGCATGCCAGGAATAATGTCTCCCTCTTGCAGAGCTGCATTGACTTG
TTCAAGAACAACTGA

Library Parental gene expression (RPM)
SRP017611_liver 33 .60 RPM
SRP017611_kidney 107 .13 RPM
SRP017611_brain 58 .67 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000010128 ortholog_one2one 2 retrogenes
retro_chof_1478, retro_chof_2166,
Callithrix jacchus ENSCJAG00000004947 ortholog_one2one 2 retrogenes
retro_cjac_2192, retro_cjac_3243,
Homo sapiens ENSG00000089006 ortholog_one2one 2 retrogenes
retro_hsap_1051, retro_hsap_2945,
Gorilla gorilla ENSGGOG00000008953 ortholog_one2one 1 retrogene
retro_ggor_829,
Macropus eugenii ENSMEUG00000009110 ortholog_one2one 1 retrogene
retro_meug_475,
Macaca mulatta ENSMMUG00000011476 ortholog_one2one 2 retrogenes
retro_mmul_1746, retro_mmul_832,
Nomascus leucogenys ENSNLEG00000009714 ortholog_one2one 1 retrogene
retro_nleu_2071,
Otolemur garnettii ENSOGAG00000006157 ortholog_one2many 1 retrogene
retro_ogar_1203,
Pongo abelii ENSPPYG00000010730 ortholog_one2one 2 retrogenes
retro_pabe_2442, retro_pabe_877,
Pan troglodytes ENSPTRG00000013278 ortholog_one2one 2 retrogenes
retro_ptro_2052, retro_ptro_717,
Sus scrofa ENSSSCG00000007088 ortholog_one2one 1 retrogene
retro_sscr_593,
Ictidomys tridecemlineatus ENSSTOG00000015416 ortholog_one2many 1 retrogene
retro_itri_1176,
Tursiops truncatus ENSTTRG00000016432 ortholog_one2one 1 retrogene
retro_ttru_410,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_1323 96.78 100.00
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Download FASTA sequences of all ENSOCUG00000017072 retrocopies