Parental gene:

VTI1B, ENSCJAG00000015263

Aliases:None
Description:vesicle transport through interaction with t-SNAREs 1B [Source:HGNC Symbol;Acc:17793]
Organism:Marmoset (Callithrix jacchus)
Coordinates:10:92863972..92887491(-)


>ENSCJAG00000015263
ATGGCCACCTCCGCCGCCTCCTCGGAGCATTTCGAGAAGCTGCACGAGATCTTCCGCGGCCTCCATGAAGACCTGCAAGG
GGTGCCCGAGCGGCTGCTGGGGACGGCGGGGACCGAAGAGAAGAAGAAGTTGATCAGGGATTTTGATGAAAAACAACAGG
AAGCAAATGAAACGCTGGCAGAGATGGAGGAGGAGCTACGTTATGCACCCCTCTCTTTCCGTAACCCCATGATGTCTAAG
CTTCGAAACTACCGGAAGGACCTTGCCAAAATCCATCGGGAGGTGAGAAGCACACCTTTGACAGCCACGCCTGGAGGCCG
AGGAGATATGAAGTATGGCATATATGCTGTAGAAAATGAGCATATGAATCGGCTGCAGTCTCAAAGGTCACTGCTTCTAC
AAGGCACTGAAAGCCTGAACCGGGCCACCCAAAGTATTGAACGTTCTCATCGGATTGCCACGGAGACTGACCAGATTGGT
TCAGAAATCATAGAAGAGCTGGGGGAACAACGAGACCAGTTAGAACGCACAAAGAATAGACTGGTAAACACAAGTGAAAA
CTTGAGCAAAAGTCGAAAGATTCTCCGTTCAATGTCCAGAAAAGTGACAACCAACAAGCTGCTGCTTTCCATCATCATCT
TACTGGAGCTCGCCATCCTGGGAGGCCTGGTTTACTACAAATTCTTTCGCAGCCATTGA

Library Parental gene expression (RPM)
SRP051959_colon 8 .59 RPM
SRP051959_heart 13 .52 RPM
SRP051959_kidney 17 .48 RPM
SRP051959_liver 12 .26 RPM
SRP051959_lung 12 .64 RPM
SRP051959_lymph_node 12 .85 RPM
SRP051959_skeletal_muscle 17 .23 RPM
SRP051959_spleen 14 .71 RPM



Species Parental gene accession Homology type Retrogenes number
Dasypus novemcinctus ENSDNOG00000003643 ortholog_one2one 2 retrogenes
retro_dnov_1503, retro_dnov_2031,
Dipodomys ordii ENSDORG00000015939 ortholog_one2one 2 retrogenes
retro_dord_52, retro_dord_716,
Echinops telfairi ENSETEG00000006101 ortholog_one2many 1 retrogene
retro_etel_783,
Felis catus ENSFCAG00000014090 ortholog_one2one 1 retrogene
retro_fcat_1855,
Homo sapiens ENSG00000100568 ortholog_one2one 3 retrogenes
retro_hsap_1002, retro_hsap_2682, retro_hsap_3013,
Gorilla gorilla ENSGGOG00000005620 ortholog_one2one 2 retrogenes
retro_ggor_1871, retro_ggor_797,
Macropus eugenii ENSMEUG00000004910 ortholog_one2one 2 retrogenes
retro_meug_499, retro_meug_697,
Microcebus murinus ENSMICG00000010843 ortholog_one2one 1 retrogene
retro_mmur_849,
Myotis lucifugus ENSMLUG00000011184 ortholog_one2many 3 retrogenes
retro_mluc_1299, retro_mluc_2393, retro_mluc_781,
Macaca mulatta ENSMMUG00000015866 ortholog_one2many 1 retrogene
retro_mmul_1420,
Mustela putorius furo ENSMPUG00000007130 ortholog_one2one 1 retrogene
retro_mputfur_1516,
Nomascus leucogenys ENSNLEG00000000780 ortholog_one2many 4 retrogenes
retro_nleu_1184, retro_nleu_2241, retro_nleu_231, retro_nleu_83,
Pongo abelii ENSPPYG00000005927 ortholog_one2one 5 retrogenes
retro_pabe_2298, retro_pabe_2498, retro_pabe_2602, retro_pabe_845, retro_pabe_974,
Pan troglodytes ENSPTRG00000006468 ortholog_one2one 3 retrogenes
retro_ptro_1808, retro_ptro_2037, retro_ptro_751,
Pteropus vampyrus ENSPVAG00000011671 ortholog_one2one 3 retrogenes
retro_pvam_132, retro_pvam_592, retro_pvam_797,
Tupaia belangeri ENSTBEG00000003049 ortholog_one2one 1 retrogene
retro_tbel_3432,
Tarsius syrichta ENSTSYG00000007688 ortholog_one2one 2 retrogenes
retro_tsyr_1662, retro_tsyr_94,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1439 74.86 78.02
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Download FASTA sequences of all ENSCJAG00000015263 retrocopies