Parental gene:

VTI1B, ENSFCAG00000014090

Aliases:None
Description:vesicle transport through interaction with t-SNAREs 1B [Source:HGNC Symbol;Acc:17793]
Organism:Cat (Felis catus)
Coordinates:B3:114976631..115008847(-)


>ENSFCAG00000014090
ATGGCCACCTCCGCTGCCTCTTCGGAGCATTTCGAGAAACTTCACGAGATCTTCCGCGGCCTCCATGAAGACCTGCGAGG
GGTGCCGGAGCGGCTCCTGGGGACAGCGGGGACAGAAGAGAAGAAAAAACTGATCAGAGATTTTGATGAAAAGCAACAGG
AAGCAAATGAAACGCTGGCAGAGATGGAAGAGGAACTACGTTATGCACCTCTGTCTTTCCGTAACCCTATGATGTCTAAG
CTTCGAACCTACCGGAAGGACCTTGCTAAACTCCATCGGGAAGTGAGAAGCACACCTTTGACAGCCACACCTGGGGGCCG
AGGAGACATGAAATATGGCACATACACTGTAGAGAATGAGCATATGAATCGGCTACAGTCTCAAAGGGCATTGCTTCTGC
AAGGCACTGACAGCCTGAACCGGGCTACCCAGAGTATTGAGCGTTCTCATCGGATTGCCACAGAGACTGACCAGATTGGC
TCAGAAATCATAGAAGAGCTGGGTGAGCAACGTGATCAATTGGAGCGTACTAAGAATAGGCTGGTAAACACAAGTGAAAA
TTTGAGCAAAAGTCGAAAGATTCTCCGTTCAATGTCCAGAAAAGTGACAACCAACAAGCTGCTACTTTCCATCGTCATCT
TACTGGAGCTGGCCATCCTAGGGGGTCTGGTTTATTACAAATTCTTTCACAAGCATTGA

Library Parental gene expression (RPM)
SRP017611_liver 14 .35 RPM
SRP017611_kidney 33 .70 RPM
SRP017611_brain 28 .92 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000015263 ortholog_one2one 1 retrogene
retro_cjac_1439,
Dasypus novemcinctus ENSDNOG00000003643 ortholog_one2one 2 retrogenes
retro_dnov_1503, retro_dnov_2031,
Dipodomys ordii ENSDORG00000015939 ortholog_one2one 2 retrogenes
retro_dord_52, retro_dord_716,
Echinops telfairi ENSETEG00000006101 ortholog_one2many 1 retrogene
retro_etel_783,
Homo sapiens ENSG00000100568 ortholog_one2one 3 retrogenes
retro_hsap_1002, retro_hsap_2682, retro_hsap_3013,
Gorilla gorilla ENSGGOG00000005620 ortholog_one2one 2 retrogenes
retro_ggor_1871, retro_ggor_797,
Macropus eugenii ENSMEUG00000004910 ortholog_one2one 2 retrogenes
retro_meug_499, retro_meug_697,
Microcebus murinus ENSMICG00000010843 ortholog_one2one 1 retrogene
retro_mmur_849,
Myotis lucifugus ENSMLUG00000011184 ortholog_one2many 3 retrogenes
retro_mluc_1299, retro_mluc_2393, retro_mluc_781,
Macaca mulatta ENSMMUG00000015866 ortholog_one2many 1 retrogene
retro_mmul_1420,
Mustela putorius furo ENSMPUG00000007130 ortholog_one2one 1 retrogene
retro_mputfur_1516,
Nomascus leucogenys ENSNLEG00000000780 ortholog_one2many 4 retrogenes
retro_nleu_1184, retro_nleu_2241, retro_nleu_231, retro_nleu_83,
Pongo abelii ENSPPYG00000005927 ortholog_one2one 5 retrogenes
retro_pabe_2298, retro_pabe_2498, retro_pabe_2602, retro_pabe_845, retro_pabe_974,
Pan troglodytes ENSPTRG00000006468 ortholog_one2one 3 retrogenes
retro_ptro_1808, retro_ptro_2037, retro_ptro_751,
Pteropus vampyrus ENSPVAG00000011671 ortholog_one2one 3 retrogenes
retro_pvam_132, retro_pvam_592, retro_pvam_797,
Tupaia belangeri ENSTBEG00000003049 ortholog_one2one 1 retrogene
retro_tbel_3432,
Tarsius syrichta ENSTSYG00000007688 ortholog_one2one 2 retrogenes
retro_tsyr_1662, retro_tsyr_94,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_1855 87.12 100.00
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Download FASTA sequences of all ENSFCAG00000014090 retrocopies