RetrogeneDB ID:

retro_meug_697

Retrocopy
location
Organism:Wallaby (Macropus eugenii)
Coordinates:Scaffold16332:12690..13093(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:VTI1B
Ensembl ID:ENSMEUG00000004910
Aliases:None
Description:vesicle transport through interaction with t-SNAREs 1B [Source:HGNC Symbol;Acc:17793]


Retrocopy-Parental alignment summary:






>retro_meug_697
ATGGCGGTTGGGCTGTCTTCGAAGCCTTTAGAGAAGTTGCACAAGATCTTCCGCGGGCTCTGCAATGACCTGGGAGGAGT
ACCCGACAGGCTCCGAGGAACCGGGGCGACCAAAGAGAAAAAGAAGTTAATCAGAGATTTTGATGAGAAGCAACAGGAAG
TAAATAAAACGTTGGCAGAGATGGAAGAGGAGTTACACTATGCCCCGGTCTTTTCGTAACCCCATGATGGCCAAACTTCG
AAGCTACCGCAGAGACCTTGTCAAGCTCCAGAGGGAGGTGAGGAACACTCCACTGGCAGTGCCACCTAGGGGCCAAGGAG
ACAGTAGATATGGGGTATATGCCTTAGAGAACGAGCACATGAATCGGTTGCATCTCAAAGGGTTGATACACCAAGGTAAC
AAA

ORF - retro_meug_697 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 70.07 %
Parental protein coverage: 58.77 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMAAAVSSEPFEKLHEIFRGLYDELRGVPDRLLGTGGT--EKKLIRDFDEKQQEANETLAEMEEELRYAPL
MA...SS.P.EKLH.IFRGL...L.GVPDRL.GTG.T...KKLIRDFDEKQQE.N.TLAEMEEEL.YAP.
RetrocopyMAVGLSSKPLEKLHKIFRGLCNDLGGVPDRLRGTGATKEKKKLIRDFDEKQQEVNKTLAEMEEELHYAPV
ParentalSFRNP-MMAKLRSYRRDLAKLQREVRSTPLTVPPGGRGDSRYGAYTIEDEHMNRLQSQRALLLQGTE
.F..P.MMAKLRSYRRDL.KLQREVR.TPL.VPP.G.GDSRYG.Y..E.EHMNRL.....L..QG..
Retrocopy-FS*P>MMAKLRSYRRDLVKLQREVRNTPLAVPPRGQGDSRYGVYALENEHMNRLH-LKGLIHQGNK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_697 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_697 was not experimentally validated.

Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 18 parental genes, and 38 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000152631 retrocopy
Dasypus novemcinctus ENSDNOG000000036432 retrocopies
Dipodomys ordii ENSDORG000000159392 retrocopies
Echinops telfairi ENSETEG000000061011 retrocopy
Felis catus ENSFCAG000000140901 retrocopy
Homo sapiens ENSG000001005683 retrocopies
Gorilla gorilla ENSGGOG000000056202 retrocopies
Macropus eugenii ENSMEUG00000004910 2 retrocopies
retro_meug_499, retro_meug_697 ,
Microcebus murinus ENSMICG000000108431 retrocopy
Myotis lucifugus ENSMLUG000000111843 retrocopies
Macaca mulatta ENSMMUG000000158661 retrocopy
Mustela putorius furoENSMPUG000000071301 retrocopy
Nomascus leucogenys ENSNLEG000000007804 retrocopies
Pongo abelii ENSPPYG000000059275 retrocopies
Pan troglodytes ENSPTRG000000064683 retrocopies
Pteropus vampyrus ENSPVAG000000116713 retrocopies
Tupaia belangeri ENSTBEG000000030491 retrocopy
Tarsius syrichta ENSTSYG000000076882 retrocopies



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