RetrogeneDB ID: | retro_fcat_1855 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | F2:51783553..51784248(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | VTI1B | ||
Ensembl ID: | ENSFCAG00000014090 | ||
Aliases: | None | ||
Description: | vesicle transport through interaction with t-SNAREs 1B [Source:HGNC Symbol;Acc:17793] |
Percent Identity: | 87.12 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MATSAASSEHFEKLHEIFRGLHEDLRGVPERLLG-TAGTEEKKKLIRDFDEKQQEANETLAEMEEELRYA |
MATSAA.SEHFEKLH.IF..LHEDL.GVPE.LLG..AG.EEKKKLIRDFDEKQQEANE.LAEMEEE..YA | |
Retrocopy | MATSAAFSEHFEKLHQIFFCLHEDLQGVPEQLLG<AAGAEEKKKLIRDFDEKQQEANEMLAEMEEERHYA |
Parental | PLSFRNPMMSKLRTYRKDLAKLHREVRSTPLTATPGGRGDMKYGTYTVENEHMNRLQSQRALLLQGTDSL |
PLSF.NPMMSKL.TYRKDLAKLH.EVRSTPLTATPGGRGDMKYGTYTVENEHMN.LQSQRALLLQGTDSL | |
Retrocopy | PLSFCNPMMSKLGTYRKDLAKLHQEVRSTPLTATPGGRGDMKYGTYTVENEHMNQLQSQRALLLQGTDSL |
Parental | NRATQSIERSHRIATETDQIGSEIIEELGEQRDQLERTKNRLVNTSENLSKSRKILRSMSRKVTTNKLLL |
N.ATQS.E.S.RIATETD.IGSEIIEELGEQ.D.LERTK.RLVNTSENLSKSRKIL.SMSRKVTTNKLLL | |
Retrocopy | NQATQSTECSYRIATETD*IGSEIIEELGEQCDPLERTKSRLVNTSENLSKSRKILHSMSRKVTTNKLLL |
Parental | SIVILLELAILGGLVYYKFFHKH |
SIVILL.L.IL.GLVY.KFFH.H | |
Retrocopy | SIVILLDLTILAGLVYCKFFHRH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 28 .92 RPM |
SRP017611_kidney | 0 .00 RPM | 33 .70 RPM |
SRP017611_liver | 0 .00 RPM | 14 .35 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000015263 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000003643 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000015939 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000006101 | 1 retrocopy | |
Felis catus | ENSFCAG00000014090 | 1 retrocopy |
retro_fcat_1855 ,
|
Homo sapiens | ENSG00000100568 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000005620 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000004910 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000010843 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000011184 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000015866 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000007130 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000780 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000005927 | 5 retrocopies | |
Pan troglodytes | ENSPTRG00000006468 | 3 retrocopies | |
Pteropus vampyrus | ENSPVAG00000011671 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000003049 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000007688 | 2 retrocopies |