Parental gene: | VTI1B, ENSPPYG00000005927 |
| Aliases: | None |
| Description: | vesicle transport through interaction with t-SNAREs 1B [Source:HGNC Symbol;Acc:17793] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 14:68631402..68658781(-) |
>ENSPPYG00000005927
ATGGCCGCCTCCGCCGCCTCCTCGGAGCATTTCGAGAAGCTGCACGAGATCTTCCGCGGCCTCCATGAAGACCTACAAGG
AGTGCCCGAGCGGCTGCTGGGGACGGCGGGGACCGAAGAGAAGAAGAAATTGATCAGGGATTTTGATGAAAAGCAACAGG
AAGCAAATGAAACGCTGGCAGAGATGGAGGAGGAGCTACGTTATGCACCCCTGTCTTTCCGAAACCCCATGATGTCCAAG
CTTCGAAACTACCGGAAGGACCTTGCTAAACTCCATCGGGAGGTGAGAAGCACACCTTTGACAGCCACACCTGGAGGCCG
AGGAGACATGAAATATGGCATATATGCTGTAGAGAATGAGCATATGAATCGGCTGCAGTCTCAAAGGGCAATGCTTCTGC
AAGGCACTGAAAGCCTGAACCGGGCCACCCAAAGTATTGAACGTTCTCATCGGATTGCCACGGAGACTGACCAGATTGGC
TCAGAAATCATAGAAGAGCTGGGGGAACAACGAGACCAGTTAGAACGTACCAAGAGTAGACTGGTAAACACAAGTGAAAA
CTTGAGCAAAAGTCGAAAGATTCTCCGTTCAATGTCCAGAAAAGTGACAACCAACAAGCTGCTGCTTTCCATTATCATCT
TACTGGAGCTCGCCATCCTGGGAGGCCTGGTTTACTACAAATTCTTTCGCAGCCATTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 80 .61 RPM |
| SRP007412_cerebellum | 47 .42 RPM |
| SRP007412_heart | 29 .11 RPM |
| SRP007412_kidney | 83 .36 RPM |
| SRP007412_liver | 40 .30 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000015263 | ortholog_one2one | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000003643 | ortholog_one2one | 2 retrogenes | |
| Dipodomys ordii | ENSDORG00000015939 | ortholog_one2one | 2 retrogenes | |
| Echinops telfairi | ENSETEG00000006101 | ortholog_one2many | 1 retrogene | |
| Felis catus | ENSFCAG00000014090 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000100568 | ortholog_one2one | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000005620 | ortholog_one2one | 2 retrogenes | |
| Macropus eugenii | ENSMEUG00000004910 | ortholog_one2one | 2 retrogenes | |
| Microcebus murinus | ENSMICG00000010843 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000011184 | ortholog_one2many | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000015866 | ortholog_one2many | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000007130 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000000780 | ortholog_one2many | 4 retrogenes | |
| Pan troglodytes | ENSPTRG00000006468 | ortholog_one2one | 3 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000011671 | ortholog_one2one | 3 retrogenes | |
| Tupaia belangeri | ENSTBEG00000003049 | ortholog_one2one | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000007688 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_845 | 73.33 | 57.33 | Please wait, loading  |
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| 2. | retro_pabe_974 | 73.33 | 57.33 | Please wait, loading |
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| 3. | retro_pabe_2298 | 90.34 | 75.43 | Please wait, loading |
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| 4. | retro_pabe_2498 | 86.28 | 96.98 | Please wait, loading |
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| 5. | retro_pabe_2602 | 85.40 | 96.98 | Please wait, loading |
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Download FASTA sequences of all ENSPPYG00000005927 retrocopies