Parental gene:

RPL7A, ENSCPOG00000001324

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_18:39261857..39264505(+)


>ENSCPOG00000001324
CTCTCTGCCCAGCCGAAAGGAAAGAAAGCCAAGGGGAAGAAGGTGGCACCGGCCCCTGCTGTCGTGAAGAAGCAGGAGGC
CAAGAAGGTGGTAAATCCGCTCTTTGAGAAGAGGCCCAAGAACTTTGGCATCGGACAGGACATTCAGCCCAAGAGAGATC
TCACCCGCTTCGTCAAATGGCCCCGCTACATCCGACTGCAGCGACAGAGGGCGATCCTGTATAAGCGGCTGAAGGTGCCC
CCTGCGATCAACCAGTTCACCCAGGCCTTGGACCGCCAAACAGCTACCCAGCTGCTTAAGCTCGCCCACAAGTATAGACC
AGAGACGAAGCAAGAGAAGAAGCAGAGGCTTCTGGCCCGGGCTGAGAAGAAGGCTGCTGGCAAGGGGGACGTCCCCACTA
AGAGACCTCCCGTCCTCCGAGCAGGTGTTAATACTGTCACCACTCTAGTGGAGAACAAGAAGGCTCAGCTAGTGGTGATC
GCACACGACGTGGACCCCATTGAGCTGGTTGTGTTCCTGCCTGCCCTGTGTCGCAAGATGGGGGTCCCTTACTGCATCAT
CAAGGGGAAGGCCAGGCTGGGGCGCCTGGTCCACAGGAAAACCTGCACCACTGTCGCCTTCACACAAGTCAACTCGGAGG
ACAAGGGAGCACTGGCCAAGTTGGTGGAGGCAATCAGGACCAACTACAATGACAGATATGACGAGATCCGTCGTCACTGG
GGAGGCAACGTCCTGGGCCCCAAATCTGTGGCTCGCATCGCCAAGCTGGAAAAGGCAAAGGCTAAAGAGCTTGCCACTAA
ACTGGGCTAA

Library Parental gene expression (RPM)
SRP017611_liver 174 .76 RPM
SRP017611_kidney 253 .76 RPM
SRP017611_brain 151 .96 RPM
SRP040447_lung 405 .55 RPM
SRP040447_skeletal_muscle 388 .76 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011708 ortholog_one2one 29 retrogenes
Canis familiaris ENSCAFG00000017680 ortholog_one2one 36 retrogenes
Callithrix jacchus ENSCJAG00000014827 ortholog_one2many 3 retrogenes
Dipodomys ordii ENSDORG00000006471 ortholog_one2one 3 retrogenes
Felis catus ENSFCAG00000005825 ortholog_one2one 20 retrogenes
Gorilla gorilla ENSGGOG00000014442 possible_ortholog 48 retrogenes
Loxodonta africana ENSLAFG00000006436 ortholog_one2one 2 retrogenes
Macropus eugenii ENSMEUG00000014550 ortholog_one2one 16 retrogenes
Myotis lucifugus ENSMLUG00000004666 ortholog_one2one 10 retrogenes
Macaca mulatta ENSMMUG00000022341 ortholog_one2one 9 retrogenes
Monodelphis domestica ENSMODG00000012754 ortholog_one2one 3 retrogenes
Mus musculus ENSMUSG00000062647 possible_ortholog 10 retrogenes
Nomascus leucogenys ENSNLEG00000013068 possible_ortholog 22 retrogenes
Otolemur garnettii ENSOGAG00000014027 ortholog_one2one 16 retrogenes
Pongo abelii ENSPPYG00000019730 possible_ortholog 52 retrogenes
Rattus norvegicus ENSRNOG00000049097 possible_ortholog 10 retrogenes
Sarcophilus harrisii ENSSHAG00000004337 ortholog_one2one 4 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000003671 possible_ortholog 3 retrogenes
Tupaia belangeri ENSTBEG00000008595 possible_ortholog 26 retrogenes
Tursiops truncatus ENSTTRG00000007645 ortholog_one2one 3 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_423 55.78 53.16
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2. retro_cpor_828 54.59 71.38
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3. retro_cpor_850 54.25 55.02
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4. retro_cpor_1296 60.41 71.00
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Download FASTA sequences of all ENSCPOG00000001324 retrocopies