Parental gene:

ENSFCAG00000005825

Aliases:None
Description:None
Organism:Cat (Felis catus)
Coordinates:D4:94060833..94063475(-)


>ENSFCAG00000005825
CCGAAAGGGAAGAAGGCCAAGGGGAAGAAGGTGGCCCCGGCCCCTGCTGTTGTGAAGAAGCAGGAGGCCAAGAAGGTGGT
CAACCCCCTGTTTGAGAAAAGGCCCAAGAACTTTGGCATCGGACAGGACATCCAGCCCAAAAGGGACCTCACGCGCTTTG
TCAAGTGGCCCCGCTACATCCGACTGCAGCGGCAAAGGGCTATTCTCTATAAACGTCTCAAAGTGCCTCCTGCAATTAAC
CAGTTCACCCAGGCCTTGGACCGCCAGACAGCCACTCAGCTGCTCAAGCTGGCCCACAAATACAGGCCGGAGACCAAGCA
AGAGAAGAAGCAGAGATTGCTAGCCAGGGCTGAGAAGAAGGCTGCTGGCAAAGGGGATGTCCCCACTAAGAGGCCCCCTG
TCCTTCGAGCTGGGGTTAACACTGTCACCACCTTGGTGGAAAACAAGAAGGCTCAGCTGGTGGTGATCGCACACGATGTG
GATCCTATCGAGCTGGTTGTCTTCCTGCCTGCCCTGTGTCGTAAGATGGGGGTTCCCTACTGCATCATCAAGGGGAAGGC
CAGGCTGGGGCGACTGGTCCACAGGAAGACCTGCACCACTGTTGCCTTCACACAGGTTAACTCGGAAGACAAAGGAGCTC
TGGCTAAGCTGGTGGAAGCTGTCAGAACCAATTACAACGACAGATACGATGAGATCCGCCGCCACTGGGGAGGCAACGTC
CTGGGTCCAAAGTCGGTGGCTCGCATCGCCAAGCTGGAAAAGGCAAAGGCTAAAGAACTGGCCACCAAACTGGGC

Library Parental gene expression (RPM)
SRP017611_liver 0 .00 RPM
SRP017611_kidney 0 .00 RPM
SRP017611_brain 0 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011708 ortholog_one2one 29 retrogenes
Bos taurus ENSBTAG00000011559 possible_ortholog 5 retrogenes
Canis familiaris ENSCAFG00000017680 ortholog_one2one 36 retrogenes
Callithrix jacchus ENSCJAG00000014827 ortholog_one2many 3 retrogenes
Cavia porcellus ENSCPOG00000001324 ortholog_one2one 4 retrogenes
Dasypus novemcinctus ENSDNOG00000024424 possible_ortholog 8 retrogenes
Dipodomys ordii ENSDORG00000006471 ortholog_one2many 3 retrogenes
Homo sapiens ENSG00000148303 possible_ortholog 21 retrogenes
Gorilla gorilla ENSGGOG00000014442 possible_ortholog 48 retrogenes
Loxodonta africana ENSLAFG00000006436 ortholog_one2one 2 retrogenes
Macropus eugenii ENSMEUG00000014550 ortholog_one2many 16 retrogenes
Myotis lucifugus ENSMLUG00000004666 ortholog_one2one 10 retrogenes
Macaca mulatta ENSMMUG00000022341 ortholog_one2one 9 retrogenes
Monodelphis domestica ENSMODG00000012754 ortholog_one2many 3 retrogenes
Mus musculus ENSMUSG00000062647 possible_ortholog 10 retrogenes
Nomascus leucogenys ENSNLEG00000013068 possible_ortholog 22 retrogenes
Otolemur garnettii ENSOGAG00000014027 ortholog_one2one 16 retrogenes
Ochotona princeps ENSOPRG00000005726 possible_ortholog 4 retrogenes
Pongo abelii ENSPPYG00000019730 possible_ortholog 52 retrogenes
Pteropus vampyrus ENSPVAG00000017045 possible_ortholog 11 retrogenes
Rattus norvegicus ENSRNOG00000049097 possible_ortholog 10 retrogenes
Sarcophilus harrisii ENSSHAG00000004337 ortholog_one2many 4 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000003671 possible_ortholog 3 retrogenes
Tupaia belangeri ENSTBEG00000008595 possible_ortholog 26 retrogenes
Tarsius syrichta ENSTSYG00000005467 possible_ortholog 20 retrogenes
Tursiops truncatus ENSTTRG00000007645 ortholog_one2many 3 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_214 58.94 75.85
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2. retro_fcat_252 75.92 71.32
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3. retro_fcat_385 76.89 82.64
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4. retro_fcat_389 82.14 72.83
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5. retro_fcat_468 68.79 57.36
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6. retro_fcat_542 68.86 84.91
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7. retro_fcat_628 77.36 99.62
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8. retro_fcat_694 65.43 98.87
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9. retro_fcat_943 74.18 90.94
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10. retro_fcat_1123 72.86 100.00
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11. retro_fcat_1137 74.39 61.13
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12. retro_fcat_1170 70.26 100.00
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13. retro_fcat_1277 77.60 72.08
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14. retro_fcat_1315 64.71 93.96
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15. retro_fcat_1318 70.47 72.45
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16. retro_fcat_1344 72.88 66.04
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17. retro_fcat_1528 76.23 99.62
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18. retro_fcat_1583 82.41 81.13
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19. retro_fcat_1771 78.44 100.00
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20. retro_fcat_1980 72.12 98.87
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Download FASTA sequences of all ENSFCAG00000005825 retrocopies