RetrogeneDB ID: | retro_cpor_828 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_3:19620213..19620773(+) | ||
Located in intron of: | ENSCPOG00000025693 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7A | ||
Ensembl ID: | ENSCPOG00000001324 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 54.59 % |
Parental protein coverage: | 71.38 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | KVPPAINQFTQA-LDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTV |
K.PPAINQ.T...L...TATQL.KLA.KYRPE.K.E.KQ...A.AE.KAA..G...TK.PPVL.A..... | |
Retrocopy | KGPPAINQSTYP<LNGPTATQLHKLAPKYRPEEKEEQKQEMSA*AETKAANHGHSTTKSPPVLLAEL--I |
Parental | TTLVENKKAQLVVIAHDVD-PI-ELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSED |
.TLVE..KAQLVV.AH....P...L..FLP........PYCIIK..AR.G.L.HR.TC.T..FT..NS.. | |
Retrocopy | ATLVESRKAQLVVTAHGIG>PLSKLSFFLPSTLDR--TPYCIIKEEARPGHLFHRSTCATTVFTKINSGE |
Parental | -KGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG |
.KGAL.KLV.A.RT.YNDR..EI..H.GGN.LGP..........KAK..ELAT..G | |
Retrocopy | <KGALVKLVGAVRTHYNDRF-EIHHH*GGNDLGP-NLWSTPSWKKAKGTELATEPG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 151 .96 RPM |
SRP017611_kidney | 0 .00 RPM | 253 .76 RPM |
SRP017611_liver | 0 .00 RPM | 174 .76 RPM |
SRP040447_lung | 0 .03 RPM | 405 .55 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 388 .76 RPM |