Parental gene:

CKS1B, ENSCPOG00000024061

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_10:15920805..15923983(+)


>ENSCPOG00000024061
GCGACCATGTCTCATAAACAAATTTATTATTCGGACAAATACGACGACGAGGAGTTTGAATACAGGCATGTCATGTTGCC
CAAGGATATAGCCAAGCTGGTCCCTAAAACCCACTTGATGTCTGAATCTGAATGGAGAAATCTTGGTGTTCAGCAGAGTC
AAGGATGGGTCCATTATATGATCCATGAACCAGAGCCGCACATCTTGCTGTTCCGACGGCCACTACCCAAGAAACCAAAC
AAATGA

Library Parental gene expression (RPM)
SRP017611_liver 7 .79 RPM
SRP017611_kidney 7 .43 RPM
SRP017611_brain 1 .67 RPM
SRP040447_lung 7 .19 RPM
SRP040447_skeletal_muscle 3 .26 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000033635 possible_ortholog 10 retrogenes
retro_cjac_13, retro_cjac_1441, retro_cjac_1478, retro_cjac_1779, retro_cjac_2040, retro_cjac_2212, retro_cjac_2649, retro_cjac_276, retro_cjac_57, retro_cjac_876,
Dipodomys ordii ENSDORG00000003764 possible_ortholog 6 retrogenes
retro_dord_25, retro_dord_290, retro_dord_599, retro_dord_64, retro_dord_647, retro_dord_739,
Homo sapiens ENSG00000173207 possible_ortholog 1 retrogene
retro_hsap_27,
Gorilla gorilla ENSGGOG00000013419 possible_ortholog 4 retrogenes
retro_ggor_10, retro_ggor_1070, retro_ggor_2739, retro_ggor_659,
Myotis lucifugus ENSMLUG00000002408 ortholog_one2one 1 retrogene
retro_mluc_1303,
Otolemur garnettii ENSOGAG00000006384 ortholog_one2one 10 retrogenes
retro_ogar_1673, retro_ogar_1703, retro_ogar_1713, retro_ogar_1983, retro_ogar_2317, retro_ogar_245, retro_ogar_3310, retro_ogar_450, retro_ogar_530, retro_ogar_877,
Rattus norvegicus ENSRNOG00000042561 possible_ortholog 1 retrogene
retro_rnor_97,
Sarcophilus harrisii ENSSHAG00000004796 ortholog_one2one 1 retrogene
retro_shar_786,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_859 88.37 100.00
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2. retro_cpor_941 60.27 90.12
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Download FASTA sequences of all ENSCPOG00000024061 retrocopies