Parental gene:

Cks1b, ENSRNOG00000042561

Aliases:Cks1b, RGD1561797
Description:cyclin-dependent kinases regulatory subunit 1 [Source:RefSeq peptide;Acc:NP_001129221]
Organism:Rat (Rattus norvegicus)
Coordinates:2:208154852..208159427(-)


>ENSRNOG00000042561
ATGTCTCACAAACAAATCTACTATTCGGACAAATACGACGACGAGGAATTCGAGTACCGGCATGTCATGTTGCCCATTGC
CATAGCCAAGCTGGTCCCTAAAACCCATTTGATGTCTGAATCTGAATGGAGAAATCTCGGTGTTCAGCAGAGTCAGGGAT
GGGTTCACTATATGATCCATGAACCAGAACCTCACATCTTACTGTTCCGGCGGCCACTGCCCAAGAAGCCAAAGAAATGA

Library Parental gene expression (RPM)
SRP017611_liver 7 .60 RPM
SRP017611_kidney 1 .60 RPM
SRP017611_brain 1 .22 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000033635 ortholog_one2many 10 retrogenes
retro_cjac_13, retro_cjac_1441, retro_cjac_1478, retro_cjac_1779, retro_cjac_2040, retro_cjac_2212, retro_cjac_2649, retro_cjac_276, retro_cjac_57, retro_cjac_876,
Cavia porcellus ENSCPOG00000024061 possible_ortholog 2 retrogenes
retro_cpor_859, retro_cpor_941,
Dipodomys ordii ENSDORG00000003764 possible_ortholog 6 retrogenes
retro_dord_25, retro_dord_290, retro_dord_599, retro_dord_64, retro_dord_647, retro_dord_739,
Equus caballus ENSECAG00000003460 ortholog_one2one 1 retrogene
retro_ecab_975,
Erinaceus europaeus ENSEEUG00000015895 possible_ortholog 1 retrogene
retro_eeur_302,
Echinops telfairi ENSETEG00000003337 ortholog_one2one 4 retrogenes
retro_etel_1246, retro_etel_1938, retro_etel_239, retro_etel_497,
Felis catus ENSFCAG00000001347 ortholog_one2one 1 retrogene
retro_fcat_1041,
Homo sapiens ENSG00000173207 ortholog_one2many 1 retrogene
retro_hsap_27,
Gorilla gorilla ENSGGOG00000013419 ortholog_one2many 4 retrogenes
retro_ggor_10, retro_ggor_1070, retro_ggor_2739, retro_ggor_659,
Loxodonta africana ENSLAFG00000032213 ortholog_one2one 1 retrogene
retro_lafr_243,
Myotis lucifugus ENSMLUG00000002408 possible_ortholog 1 retrogene
retro_mluc_1303,
Mus musculus ENSMUSG00000028044 ortholog_one2one 1 retrogene
retro_mmus_280,
Nomascus leucogenys ENSNLEG00000011532 ortholog_one2one 3 retrogenes
retro_nleu_1098, retro_nleu_2592, retro_nleu_411,
Oryctolagus cuniculus ENSOCUG00000016204 ortholog_one2one 2 retrogenes
retro_ocun_1389, retro_ocun_18,
Otolemur garnettii ENSOGAG00000006384 possible_ortholog 10 retrogenes
retro_ogar_1673, retro_ogar_1703, retro_ogar_1713, retro_ogar_1983, retro_ogar_2317, retro_ogar_245, retro_ogar_3310, retro_ogar_450, retro_ogar_530, retro_ogar_877,
Pongo abelii ENSPPYG00000000768 ortholog_one2one 3 retrogenes
retro_pabe_1143, retro_pabe_3625, retro_pabe_717,
Pan troglodytes ENSPTRG00000001398 ortholog_one2one 4 retrogenes
retro_ptro_2769, retro_ptro_3100, retro_ptro_558, retro_ptro_944,
Rattus norvegicus ENSRNOG00000014130 within_species_paralog 5 retrogenes
retro_rnor_1209, retro_rnor_1909, retro_rnor_2742, retro_rnor_279, retro_rnor_402,
Sorex araneus ENSSARG00000012383 ortholog_one2one 2 retrogenes
retro_sara_667, retro_sara_77,
Sarcophilus harrisii ENSSHAG00000004796 possible_ortholog 1 retrogene
retro_shar_786,
Sus scrofa ENSSSCG00000029737 ortholog_one2one 1 retrogene
retro_sscr_730,
Vicugna pacos ENSVPAG00000012182 ortholog_one2one 1 retrogene
retro_vpac_532,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_97 96.20 100.00
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Download FASTA sequences of all ENSRNOG00000042561 retrocopies