RetrogeneDB ID: | retro_cpor_859 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_3:42102446..42102696(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CKS1B | ||
Ensembl ID: | ENSCPOG00000024061 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.37 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | ATMSHKQIYYSDKYDDEEFEYRHVM-LPKDIAKLVPKTHLMSESEWRN-LGVQQSQGWVHYMIH-EP-EP |
ATMSHKQIYYSDKYDDEEFEY.HVM.LPKDIAKLVPKTHLMSESEW.N.LGVQQSQGWVHYMIH.EP.EP | |
Retrocopy | ATMSHKQIYYSDKYDDEEFEYSHVM>LPKDIAKLVPKTHLMSESEWKN>LGVQQSQGWVHYMIH>EP>EP |
Parental | HIL-LFRRPLPKKPNK |
H.L...RRPLPKKPNK | |
Retrocopy | HNLGCSRRPLPKKPNK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 1 .67 RPM |
SRP017611_kidney | 0 .10 RPM | 7 .43 RPM |
SRP017611_liver | 0 .04 RPM | 7 .79 RPM |
SRP040447_lung | 0 .03 RPM | 7 .19 RPM |
SRP040447_skeletal_muscle | 0 .01 RPM | 3 .26 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000033635 | 10 retrocopies | |
Cavia porcellus | ENSCPOG00000024061 | 2 retrocopies |
retro_cpor_859 , retro_cpor_941,
|
Dipodomys ordii | ENSDORG00000003764 | 6 retrocopies | |
Homo sapiens | ENSG00000173207 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000013419 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000002408 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000006384 | 10 retrocopies | |
Rattus norvegicus | ENSRNOG00000042561 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000004796 | 1 retrocopy |