RetrogeneDB ID:

retro_ogar_877

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873530.1:2864819..2865054(+)
Located in intron of:ENSOGAG00000002188
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000006384
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_877
ATGTCACACAAACAAATTTGCTAATTGGACAAATACAATGATAAGGAGTTCAAGTACTGGCATGTCGTGTTGCTGAAGGA
CATAGACAAGCTGGTCCCTAAAACCCATTTGGATGTCTGAATCTAAATGAGGAAATCATGGCATTCAGCAGAGTCAGGTA
TGGGTCTATTATATGATGCATGAACCAGAACATCACATCTTTCGATTCCAGGGTCCACTGCCCAAGAAGCTAAAG

ORF - retro_ogar_877 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 68.35 %
Parental protein coverage: 100. %
Number of stop codons detected: 2
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMSHKQIYYSDKYDDEEFEYRHVMLPKDIAKLVPKTHL-MSESEWRNLGVQQSQGWVHYMIHEPEPHILLF
MSHKQI...DKY.D.EF.Y.HV.L.KDI.KLVPKTHL.MSES...N.G.QQSQ.WV.YM.HEPE.HI..F
RetrocopyMSHKQIC*LDKYNDKEFKYWHVVLLKDIDKLVPKTHL>MSESK*GNHGIQQSQVWVYYMMHEPEHHIFRF
ParentalRRPLPKKPK
..PLPKK.K
RetrocopyQGPLPKKLK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_877 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 22 parental genes, and 61 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG0000003363510 retrocopies
Cavia porcellus ENSCPOG000000240612 retrocopies
Dipodomys ordii ENSDORG000000037646 retrocopies
Equus caballus ENSECAG000000034601 retrocopy
Echinops telfairi ENSETEG000000033374 retrocopies
Felis catus ENSFCAG000000013471 retrocopy
Homo sapiens ENSG000001732071 retrocopy
Gorilla gorilla ENSGGOG000000134194 retrocopies
Loxodonta africana ENSLAFG000000322131 retrocopy
Myotis lucifugus ENSMLUG000000024081 retrocopy
Mus musculus ENSMUSG000000280441 retrocopy
Nomascus leucogenys ENSNLEG000000115323 retrocopies
Oryctolagus cuniculus ENSOCUG000000162042 retrocopies
Otolemur garnettii ENSOGAG00000006384 10 retrocopies
Otolemur garnettii ENSOGAG000000288431 retrocopy
Pongo abelii ENSPPYG000000007683 retrocopies
Pan troglodytes ENSPTRG000000013984 retrocopies
Rattus norvegicus ENSRNOG000000425611 retrocopy
Sorex araneus ENSSARG000000123832 retrocopies
Sarcophilus harrisii ENSSHAG000000047961 retrocopy
Sus scrofa ENSSSCG000000297371 retrocopy
Vicugna pacos ENSVPAG000000121821 retrocopy



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