Parental gene: | SKP1, ENSDNOG00000012999 |
| Aliases: | None |
| Description: | S-phase kinase-associated protein 1 [Source:HGNC Symbol;Acc:10899] |
| Organism: | Armadillo (Dasypus novemcinctus) |
| Coordinates: | GeneScaffold_1962:27229..53566(-) |
>ENSDNOG00000012999
ATGCCTTCAATTAAGTTGCAGAGTTCTGATGGAGAAATATTTGAAGTTGATGTGGAAATTGCCAAACAATCTGTGACTAT
AAAGACCATGTTGGAAGATTTGGGAATGGATGATGAAGGAGATGATGATCCAGTTCCTCTACCAAATGTTAATGCAGCAA
TATTAAAAAAGGTCATTCAGTGGTGCACCCACCACAAAGATGACCCTCCTCCTCCTGAGGATGATGAGAACAAAGAAAAG
CGAACAGATGATATCCCTGTTTGGGACCAAGAATTTCTGAAAGTTGACCAGGGAACACTTTTTGAACTTATTCTGGCTGC
AAACTACTTAGACATCAAGGGTTTGCTTGATGTTACATGCAAGACTGTTGCCAATATGATCAAGGGGAAAACTCCTGAGG
AGATTCGTAAGACCTTCAATATCAAAAATGACTTCACCGAAGAGGAGGAAGCCCAGGTACGCAAAGAGAACCAGTGGTGT
GAAGAGAAGTGA
ATGCCTTCAATTAAGTTGCAGAGTTCTGATGGAGAAATATTTGAAGTTGATGTGGAAATTGCCAAACAATCTGTGACTAT
AAAGACCATGTTGGAAGATTTGGGAATGGATGATGAAGGAGATGATGATCCAGTTCCTCTACCAAATGTTAATGCAGCAA
TATTAAAAAAGGTCATTCAGTGGTGCACCCACCACAAAGATGACCCTCCTCCTCCTGAGGATGATGAGAACAAAGAAAAG
CGAACAGATGATATCCCTGTTTGGGACCAAGAATTTCTGAAAGTTGACCAGGGAACACTTTTTGAACTTATTCTGGCTGC
AAACTACTTAGACATCAAGGGTTTGCTTGATGTTACATGCAAGACTGTTGCCAATATGATCAAGGGGAAAACTCCTGAGG
AGATTCGTAAGACCTTCAATATCAAAAATGACTTCACCGAAGAGGAGGAAGCCCAGGTACGCAAAGAGAACCAGTGGTGT
GAAGAGAAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP012922_ascending_colon | 74 .48 RPM |
| SRP012922_cerebellum | 151 .08 RPM |
| SRP012922_heart | 75 .87 RPM |
| SRP012922_kidney | 81 .32 RPM |
| SRP012922_liver | 46 .29 RPM |
| SRP012922_lung | 82 .62 RPM |
| SRP012922_quadricep_muscle | 119 .26 RPM |
| SRP012922_spleen | 93 .74 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000017810 | ortholog_one2one | 1 retrogene | |
| Canis familiaris | ENSCAFG00000000994 | ortholog_one2one | 5 retrogenes | |
| Callithrix jacchus | ENSCJAG00000013613 | possible_ortholog | 1 retrogene | |
| Echinops telfairi | ENSETEG00000007560 | possible_ortholog | 5 retrogenes | |
| Felis catus | ENSFCAG00000031140 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000022930 | possible_ortholog | 7 retrogenes | |
| Microcebus murinus | ENSMICG00000017588 | possible_ortholog | 3 retrogenes | |
| Myotis lucifugus | ENSMLUG00000022919 | ortholog_one2one | 13 retrogenes | |
| Monodelphis domestica | ENSMODG00000014168 | possible_ortholog | 4 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000022505 | ortholog_one2one | 10 retrogenes | |
| Pongo abelii | ENSPPYG00000015783 | possible_ortholog | 7 retrogenes | |
| Vicugna pacos | ENSVPAG00000001583 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_dnov_281 | 71.17 | 65.03 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_dnov_286 | 73.50 | 70.55 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_dnov_389 | 82.17 | 95.71 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_dnov_776 | 74.00 | 60.74 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_dnov_1216 | 72.34 | 54.60 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_dnov_1338 | 76.86 | 73.62 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_dnov_2433 | 100.00 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_dnov_2526 | 70.94 | 69.33 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_dnov_2647 | 100.00 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSDNOG00000012999 retrocopies