Parental gene:

SKP1, ENSDNOG00000012999

Aliases:None
Description:S-phase kinase-associated protein 1 [Source:HGNC Symbol;Acc:10899]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_1962:27229..53566(-)


>ENSDNOG00000012999
ATGCCTTCAATTAAGTTGCAGAGTTCTGATGGAGAAATATTTGAAGTTGATGTGGAAATTGCCAAACAATCTGTGACTAT
AAAGACCATGTTGGAAGATTTGGGAATGGATGATGAAGGAGATGATGATCCAGTTCCTCTACCAAATGTTAATGCAGCAA
TATTAAAAAAGGTCATTCAGTGGTGCACCCACCACAAAGATGACCCTCCTCCTCCTGAGGATGATGAGAACAAAGAAAAG
CGAACAGATGATATCCCTGTTTGGGACCAAGAATTTCTGAAAGTTGACCAGGGAACACTTTTTGAACTTATTCTGGCTGC
AAACTACTTAGACATCAAGGGTTTGCTTGATGTTACATGCAAGACTGTTGCCAATATGATCAAGGGGAAAACTCCTGAGG
AGATTCGTAAGACCTTCAATATCAAAAATGACTTCACCGAAGAGGAGGAAGCCCAGGTACGCAAAGAGAACCAGTGGTGT
GAAGAGAAGTGA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 74 .48 RPM
SRP012922_cerebellum 151 .08 RPM
SRP012922_heart 75 .87 RPM
SRP012922_kidney 81 .32 RPM
SRP012922_liver 46 .29 RPM
SRP012922_lung 82 .62 RPM
SRP012922_quadricep_muscle 119 .26 RPM
SRP012922_spleen 93 .74 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017810 ortholog_one2one 1 retrogene
retro_amel_897,
Canis familiaris ENSCAFG00000000994 ortholog_one2one 5 retrogenes
retro_cfam_1613, retro_cfam_779, retro_cfam_813, retro_cfam_889, retro_cfam_965,
Callithrix jacchus ENSCJAG00000013613 possible_ortholog 1 retrogene
retro_cjac_112,
Echinops telfairi ENSETEG00000007560 possible_ortholog 5 retrogenes
retro_etel_1730, retro_etel_515, retro_etel_758, retro_etel_762, retro_etel_811,
Felis catus ENSFCAG00000031140 ortholog_one2one 1 retrogene
retro_fcat_653,
Gorilla gorilla ENSGGOG00000022930 possible_ortholog 7 retrogenes
retro_ggor_1288, retro_ggor_1300, retro_ggor_2601, retro_ggor_2602, retro_ggor_2796, retro_ggor_2797, retro_ggor_778,
Microcebus murinus ENSMICG00000017588 possible_ortholog 3 retrogenes
retro_mmur_270, retro_mmur_803, retro_mmur_997,
Myotis lucifugus ENSMLUG00000022919 ortholog_one2one 13 retrogenes
retro_mluc_1455, retro_mluc_1738, retro_mluc_1895, retro_mluc_2009, retro_mluc_2260, retro_mluc_2261, retro_mluc_2520, retro_mluc_2527, retro_mluc_2557, retro_mluc_267, retro_mluc_383, retro_mluc_841, retro_mluc_944,
Monodelphis domestica ENSMODG00000014168 possible_ortholog 4 retrogenes
retro_mdom_1173, retro_mdom_155, retro_mdom_1648, retro_mdom_929,
Oryctolagus cuniculus ENSOCUG00000022505 ortholog_one2one 10 retrogenes
retro_ocun_1119, retro_ocun_1228, retro_ocun_1242, retro_ocun_1420, retro_ocun_1453, retro_ocun_1572, retro_ocun_1784, retro_ocun_397, retro_ocun_448, retro_ocun_553,
Pongo abelii ENSPPYG00000015783 possible_ortholog 7 retrogenes
retro_pabe_1915, retro_pabe_199, retro_pabe_2072, retro_pabe_2736, retro_pabe_2756, retro_pabe_626, retro_pabe_824,
Vicugna pacos ENSVPAG00000001583 ortholog_one2one 1 retrogene
retro_vpac_279,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_281 71.17 65.03
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2. retro_dnov_286 73.50 70.55
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3. retro_dnov_389 82.17 95.71
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4. retro_dnov_776 74.00 60.74
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5. retro_dnov_1216 72.34 54.60
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6. retro_dnov_1338 76.86 73.62
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7. retro_dnov_2433 100.00 100.00
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8. retro_dnov_2526 70.94 69.33
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9. retro_dnov_2647 100.00 100.00
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Download FASTA sequences of all ENSDNOG00000012999 retrocopies