RetrogeneDB ID: | retro_ocun_1420 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 8:69358537..69358967(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000015954 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SKP1 | ||
Ensembl ID: | ENSOCUG00000022505 | ||
Aliases: | None | ||
Description: | S-phase kinase-associated protein 1 [Source:HGNC Symbol;Acc:10899] |
Percent Identity: | 91.67 % |
Parental protein coverage: | 87.73 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPP |
M.SIKL.SSDGEIFEVDVEIAKQSVT.KTMLEDLG.DDEGDDD.VPLP.VNAAILK.VIQWCTHHKDDPP | |
Retrocopy | MTSIKL*SSDGEIFEVDVEIAKQSVTSKTMLEDLGIDDEGDDDLVPLPKVNAAILKMVIQWCTHHKDDPP |
Parental | PPEDDENKEKRTDDIPVWDQEFLKVDQGTL-FELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTF |
PPEDDENKEKRT.DI.VWDQEFLKVD.GTL.FELILAANYLDIKGLLDVTCKTVANMIKGKTPEEI.KTF | |
Retrocopy | PPEDDENKEKRTGDIRVWDQEFLKVDLGTL>FELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIHKTF |
Parental | NIKN |
NIKN | |
Retrocopy | NIKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 217 .39 RPM |
SRP017611_kidney | 0 .00 RPM | 136 .83 RPM |
SRP017611_liver | 0 .00 RPM | 40 .62 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017810 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000000994 | 5 retrocopies | |
Callithrix jacchus | ENSCJAG00000013613 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000012999 | 9 retrocopies | |
Echinops telfairi | ENSETEG00000007560 | 5 retrocopies | |
Felis catus | ENSFCAG00000031140 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000022930 | 7 retrocopies | |
Microcebus murinus | ENSMICG00000017588 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000022919 | 13 retrocopies | |
Monodelphis domestica | ENSMODG00000014168 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000022505 | 10 retrocopies |
retro_ocun_1119, retro_ocun_1228, retro_ocun_1242, retro_ocun_1420 , retro_ocun_1453, retro_ocun_1572, retro_ocun_1784, retro_ocun_397, retro_ocun_448, retro_ocun_553,
|
Pongo abelii | ENSPPYG00000015783 | 7 retrocopies | |
Vicugna pacos | ENSVPAG00000001583 | 1 retrocopy |