RetrogeneDB ID: | retro_ecab_4 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | X:100652476..100653277(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSECAG00000006930 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000008548 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 91.91 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | FEKRPRNFGLRQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHK |
FEKRP.NF...Q.IQ.KRD.TRFVKWPRYIRLQ.QRAILYKR.KVPP.IN.FTQALDRQ.ATQLLKLAHK | |
Retrocopy | FEKRPKNFSIGQGIQHKRDVTRFVKWPRYIRLQQQRAILYKRVKVPPTINKFTQALDRQIATQLLKLAHK |
Parental | YRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLP |
YRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTL.ENKKAQLVVIAHDVDPIELVVFLP | |
Retrocopy | YRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLMENKKAQLVVIAHDVDPIELVVFLP |
Parental | ALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNV |
ALCRKMGVPYCIIK.KARLGRLVHRKTCTTVA.TQVNSEDKGALAKLVEAIRTNYNDRYDEI.R.WGGNV | |
Retrocopy | ALCRKMGVPYCIIKAKARLGRLVHRKTCTTVAVTQVNSEDKGALAKLVEAIRTNYNDRYDEIGRYWGGNV |
Parental | LGPKSVARIAKLEKAKAKELATKLG |
LGPKSVARI.KLE.AKAKELATKLG | |
Retrocopy | LGPKSVARITKLEMAKAKELATKLG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 219 .77 RPM | 1464 .41 RPM |
SRP021940_cerebellum | 61 .02 RPM | 484 .89 RPM |
SRP021940_embryo | 157 .48 RPM | 883 .51 RPM |
SRP021940_placental_villous | 67 .31 RPM | 564 .68 RPM |
SRP021940_synovial_membrane | 117 .71 RPM | 942 .79 RPM |
SRP021940_testis | 45 .21 RPM | 419 .47 RPM |