Parental gene: | SUPT20H, ENSECAG00000000116 |
| Aliases: | None |
| Description: | suppressor of Ty 20 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:20596] |
| Organism: | Horse (Equus caballus) |
| Coordinates: | 17:15683069..15720184(-) |
>ENSECAG00000000116
ATGCAACAAGCTTTGGAACTAGCTTTGGATCGTGCAGAGTACGTCATTGAAAGTGCCCGACAGAGACCTCCTAAAAGGAA
ATACCTGTCTAGTGGAAGAAAATCTGTATTTCAAAAACTTTATGACTTATATATTGAAGAATGTGAAAAAGAGCCTGAGG
TTAAGAAATTAAGAAGAAATGTGAACTTGTTGGAGAAGCTTGTTATGCAGGAGACATTGTCGTGTTTAGTGGTCAACCTA
TACCCAGGAAATGAGGGATATTCTCTGATGCTCAGGGGAAAAAATGGATCAGATTCTGAGACCATTCGACTGCCTTATGA
AGAAGGGGAATTACTTGAATATTTGGATGCAGAAGAATTACCTCCTATTTTGGTTGATCTCCTAGAAAAATCTCAGGTTA
ATATTTTTCATTGTGGATGTGTCATAGCAGAAATACGTGACTACAGGCAGTCCAGTAATATGAAATCTCCTGGTTACCAA
AGTAGGCACATTCTCTTACGTCCAACAATGCAGACTTTAATCTGTGATGTACATTCAATTACAAGTGATAACCACAAATG
GACCCAGGAAGACAAACTTTTGCTTGAGAGCCAACTGATCCTTGCTACAGCTGAACCACTATGTCTTGACCCTTCTATCG
CCGTAACCTGCACTGCAAACAGACTGCTCTATAACAAGCAAAAGATGAACACACGCCCAATGAAACGGTGTTTCAAGAGG
TATTCTAGGTCCTCTCTCAATCGGCAGCAGGATCTGTCTCACTGTCCACCTCCTCCTCAGCTAAAATTACTTGATTTCTT
ACAAAAAAGAAAGGAAAGAAAAGCAGGTCAGCATTATGACCTCAAAATTTCTAAAGCAGGAAATTGTGTAGATATGTGGA
AGCAGAGTCCCTGTAACTTGGCCATACCTTCAGAAGTGGATGTGGAGAAATATGCTAAAGTGGAGAAGTCTATCAAATCT
GATGACTCACAACCAACAGTCTGGCCAGCCCATGATGTAAAAGATGATTATGTATTTGAATGCGAAGCTGGTAATCAGTA
TCAGAAAACAAAGCTGACCATTTTACAGTCACTTGGTGATCCACTTTACTATGGTAGAATACAGCCATGTAAAGAAGATG
AAGAAAGTGACAGCCAGATGTCTCCATCCCACTCCTCCACAGATGATCATTCAAATTGGTTCATTATTGGATCAAAGACT
GATGCTGAGAGGGTAGTCAATCAGTACCAGGAATTGGTTCAGAATGAAGCCAAATGTCCAGTCAAGATGTCACACAGCTC
CAGTGGCTCAGCCAGCTTGAGTCAGCTTTCTCCAGGGAAAGACACAGAACAGCCTGAGACTGTGTCAGTTCAGTCTTCAG
TATTGGGGAAGGGAGTAAAACATCGACCTCCACCCATCAAACTTCCCTCAAGCTCAGGAAATAGTTCCTCAGGTAACTAT
TTTACGCCACAACAGACTAGCAGCTTTCTTAAATCTCCAACTCCTCCTCCTGCTTCTAAGCCACCAAGCCTTTCTCGGAA
GTCATCTGTGGATCTCAATCAAGTTAGCATGCTTTCTCCAGCTGCCCTGTCACCTGCCAGCTCATCACAAAGAACCACGG
CCACCCAGGTCATGGCAAACTCTGCTGGACTTAACTTCATCAATGTAGTGGGCTCTGTTTGTGGAGCTCAGGCTTTGATG
AGTGGTTCAAACCCTATGCTGGGCTGTAACACTGGTGCCATAACTCCTGCAGGAATAAACCTGAGTGGCCTTCTACCCTC
AGGAAGTCTGCTACCAAATGCATTGCCCGGTGCAATGCAGGCAACTTCTCAAGCAGGTGTTCCATTTGGCTTAAAAAATA
CTTCAAGTCTCAGGCCCCTAAATCTGCTTCAGCTTCCAGGTGGTTCACTCATTTTTAACACTCTGCAGCAGCAGCAACAG
CAGCTCTCTCAGTTTACACCACAACAACCTCAGCAACCCACAACTTCTAGTCCTCAACAGCCAGGGGAGCAGGGTTCTGA
ACAAGGTTCAACCAGCCAAGAACAGGCCTTATCTGCTCAGCACGCTGCTGTTATTAACCTTGCTGGAGTAGGAAGTTTTA
TGCAGTCACAGGCAGCTGTGTTGTCTCAGCTTGGCTCTGCCGAGAACAGACCTGAGCAAAGCCTTCCTCAGCAGAGATTC
CAGCTCTCCTCTGCCTTTCAACAGCAGCAGCAACAGATACAACAGTTGCGATTCTTGCAGCATCAAATGGCTATGGCAGC
AGCAGCAGCACAAACAGCTCAGCTACATCGTCATCGGCATACAGGCAGCCAGTCAAAAAGTAAAATGAAGAGAGGCACGC
CAACCACTCCAAAATTCTGA
ATGCAACAAGCTTTGGAACTAGCTTTGGATCGTGCAGAGTACGTCATTGAAAGTGCCCGACAGAGACCTCCTAAAAGGAA
ATACCTGTCTAGTGGAAGAAAATCTGTATTTCAAAAACTTTATGACTTATATATTGAAGAATGTGAAAAAGAGCCTGAGG
TTAAGAAATTAAGAAGAAATGTGAACTTGTTGGAGAAGCTTGTTATGCAGGAGACATTGTCGTGTTTAGTGGTCAACCTA
TACCCAGGAAATGAGGGATATTCTCTGATGCTCAGGGGAAAAAATGGATCAGATTCTGAGACCATTCGACTGCCTTATGA
AGAAGGGGAATTACTTGAATATTTGGATGCAGAAGAATTACCTCCTATTTTGGTTGATCTCCTAGAAAAATCTCAGGTTA
ATATTTTTCATTGTGGATGTGTCATAGCAGAAATACGTGACTACAGGCAGTCCAGTAATATGAAATCTCCTGGTTACCAA
AGTAGGCACATTCTCTTACGTCCAACAATGCAGACTTTAATCTGTGATGTACATTCAATTACAAGTGATAACCACAAATG
GACCCAGGAAGACAAACTTTTGCTTGAGAGCCAACTGATCCTTGCTACAGCTGAACCACTATGTCTTGACCCTTCTATCG
CCGTAACCTGCACTGCAAACAGACTGCTCTATAACAAGCAAAAGATGAACACACGCCCAATGAAACGGTGTTTCAAGAGG
TATTCTAGGTCCTCTCTCAATCGGCAGCAGGATCTGTCTCACTGTCCACCTCCTCCTCAGCTAAAATTACTTGATTTCTT
ACAAAAAAGAAAGGAAAGAAAAGCAGGTCAGCATTATGACCTCAAAATTTCTAAAGCAGGAAATTGTGTAGATATGTGGA
AGCAGAGTCCCTGTAACTTGGCCATACCTTCAGAAGTGGATGTGGAGAAATATGCTAAAGTGGAGAAGTCTATCAAATCT
GATGACTCACAACCAACAGTCTGGCCAGCCCATGATGTAAAAGATGATTATGTATTTGAATGCGAAGCTGGTAATCAGTA
TCAGAAAACAAAGCTGACCATTTTACAGTCACTTGGTGATCCACTTTACTATGGTAGAATACAGCCATGTAAAGAAGATG
AAGAAAGTGACAGCCAGATGTCTCCATCCCACTCCTCCACAGATGATCATTCAAATTGGTTCATTATTGGATCAAAGACT
GATGCTGAGAGGGTAGTCAATCAGTACCAGGAATTGGTTCAGAATGAAGCCAAATGTCCAGTCAAGATGTCACACAGCTC
CAGTGGCTCAGCCAGCTTGAGTCAGCTTTCTCCAGGGAAAGACACAGAACAGCCTGAGACTGTGTCAGTTCAGTCTTCAG
TATTGGGGAAGGGAGTAAAACATCGACCTCCACCCATCAAACTTCCCTCAAGCTCAGGAAATAGTTCCTCAGGTAACTAT
TTTACGCCACAACAGACTAGCAGCTTTCTTAAATCTCCAACTCCTCCTCCTGCTTCTAAGCCACCAAGCCTTTCTCGGAA
GTCATCTGTGGATCTCAATCAAGTTAGCATGCTTTCTCCAGCTGCCCTGTCACCTGCCAGCTCATCACAAAGAACCACGG
CCACCCAGGTCATGGCAAACTCTGCTGGACTTAACTTCATCAATGTAGTGGGCTCTGTTTGTGGAGCTCAGGCTTTGATG
AGTGGTTCAAACCCTATGCTGGGCTGTAACACTGGTGCCATAACTCCTGCAGGAATAAACCTGAGTGGCCTTCTACCCTC
AGGAAGTCTGCTACCAAATGCATTGCCCGGTGCAATGCAGGCAACTTCTCAAGCAGGTGTTCCATTTGGCTTAAAAAATA
CTTCAAGTCTCAGGCCCCTAAATCTGCTTCAGCTTCCAGGTGGTTCACTCATTTTTAACACTCTGCAGCAGCAGCAACAG
CAGCTCTCTCAGTTTACACCACAACAACCTCAGCAACCCACAACTTCTAGTCCTCAACAGCCAGGGGAGCAGGGTTCTGA
ACAAGGTTCAACCAGCCAAGAACAGGCCTTATCTGCTCAGCACGCTGCTGTTATTAACCTTGCTGGAGTAGGAAGTTTTA
TGCAGTCACAGGCAGCTGTGTTGTCTCAGCTTGGCTCTGCCGAGAACAGACCTGAGCAAAGCCTTCCTCAGCAGAGATTC
CAGCTCTCCTCTGCCTTTCAACAGCAGCAGCAACAGATACAACAGTTGCGATTCTTGCAGCATCAAATGGCTATGGCAGC
AGCAGCAGCACAAACAGCTCAGCTACATCGTCATCGGCATACAGGCAGCCAGTCAAAAAGTAAAATGAAGAGAGGCACGC
CAACCACTCCAAAATTCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP021940_synovial_membrane | 10 .76 RPM |
| SRP021940_embryo | 33 .81 RPM |
| SRP021940_cerebellum | 17 .86 RPM |
| SRP021940_testis | 93 .10 RPM |
| SRP021940_placental_villous | 15 .20 RPM |
| SRP021940_articular_cartilage | 5 .96 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Homo sapiens | ENSG00000102710 | ortholog_one2one | 2 retrogenes | |
| Loxodonta africana | ENSLAFG00000027507 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000003590 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000005288 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000005791 | ortholog_one2one | 2 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000014609 | ortholog_one2one | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000013227 | ortholog_one2one | 1 retrogene | |
| Vicugna pacos | ENSVPAG00000007288 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ecab_1052 | 63.52 | 93.07 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ecab_1101 | 63.52 | 93.07 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSECAG00000000116 retrocopies