RetrogeneDB ID: | retro_lafr_1199 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_88:2787790..2788194(+) | ||
Located in intron of: | ENSLAFG00000017341 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSLAFG00000027507 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 52.52 % |
Parental protein coverage: | 50.38 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | QVMANSAGVNF-INVLGSVCGAQALMSGS-NPMLGYNTGAVT-PAGIQLSGLLPSGGLLPNALPAALPAS |
QV..NSAG......V.GSVCGAQAL..GS...ML..NT.AVT.P..I.L.GLLPSGGLLP.AL..ALPAS | |
Retrocopy | QVLGNSAGLGL<VTVAGSVCGAQALINGS>DSMLDCNTDAVT<PEEIHLGGLLPSGGLLPDALRGALPAS |
Parental | QAAGVPFGLKNTSSLRPLNLLQQQQLSQFTPQPQPQQPTASSPQQPGE--QCSEQ--GSASQEQALSAQ |
..AG.PFG..NTSSLRP.NL.Q....S......Q.Q.....S.Q.P.....CS.Q..G.....QA...Q | |
Retrocopy | R-AGAPFGFNNTSSLRPVNLAQCPGGSLIFNTWQQQLSQFTSGQPPQQPTTCSPQQPGGRVLDQARAVQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000000116 | 2 retrocopies | |
Homo sapiens | ENSG00000102710 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000027507 | 1 retrocopy |
retro_lafr_1199 ,
|
Macaca mulatta | ENSMMUG00000003590 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000005288 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000005791 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000014609 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013227 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000007288 | 1 retrocopy |