Parental gene: | FAM48A, ENSPPYG00000005288 |
| Aliases: | SUPT20H, FAM48A |
| Description: | protein FAM48A [Source:RefSeq peptide;Acc:NP_001128975] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 13:36799366..36856306(-) |
>ENSPPYG00000005288
ATGCAACAAGCTTTAGAACTAGCTTTGGATCGTGCAGAGTATGTCATTGAAAGTGCCCGACAGAGACCTCCTAAAAGGAA
ATACCTATCAAGTGGAAGAAAATCTGTATTTCAAAAACTTTATGACTTGTATATTGAAGAATGTGAAAAAGAACCTGAGG
TTAAGAAATTAAGAAGAAATGTGAACTTGTTAGAGAAGCTTGTTATGCAAGAGACTTTGTCATGTTTAGTGGTCAATCTA
TACCCAGGAAATGAGGGATATTCGCTGATGCTCAGGGGAAAAAACGGATCAGATTCCGAGACCATTCGCCTGCCCTATGA
AGAAGGAGAGTTGCTTGAATATTTGGATGCAGAAGAATTACCTCCTATTTTGGTTGATCTCCTAGAAAAATCTCAGGTTA
ATATTTTTCATTGCGGATGTGTCATAGCAGAAATACGTGACTACAGGCAGTCCAGTAACATGAAATCTCCTGGTTACCAA
AGTCGGCACATTCTCTTACGTCCAACAATGCAGACTTTAATTTGTGATGTACATTCAATAACAAGTGATAACCACAAATG
GACCCAGGAAGACAAACTTTTGCTTGAGAGCCAGCTCATCCTAGCTACAGCTGAACCACTCTGTCTTGATCCTTCTATAG
CAGTCACCTGTACTGCAAACAGACTGCTCTATAACAAGCAAAAGATGAACACTCGCCCAATGAAACGGTGTTTCAAGAGG
TATTCCAGATCCTCTCTGAATCGGCAGCAAGATCTATCTCATTGTCCACCTCCTCCTCAGCTGAGTTACTTGATTTCTTA
CAAAAAGAAAGGAAGAAAAGCAGGTCAGCATTATGACCTCAAATCTAAGGCAGGAAATTGTGTAGATATGTGGAAACGGA
GTCCCTGTAATTTGGCCATACCTTCTGAAGTAGATGTGGAGAAGTATGCTAAAGTGGAAAAGTCTATCAAATCTGATGAC
TCACAGCCAACAGTCTGGCCTGCCCATGATGTAAAAGATGATTATGTATTTGAATGTGAAGCTAGTACTCAGTATCAGAA
AACAAAGCTGACCATCTTGCAGTCGCTTGGAGATCCACTTTACTATGGTAAAATACAGCCATGTAAAGCAGATGAAGAAA
GTGACAGCCAGATGTCTCCATCACACTCGTCCACAGATGATCATTCAAACTGGTTCATTATTGGATCAAAGACCGATGCT
GAGAGGGTAGTCAATCAGTACCAAGAATTAGTCCAGAATGAAGCCAAATGTCCGGTCAAGATGTCACACAGCTCCAGTGG
CTCAGCCAGTCTGAGTCAGGTTTCTCCAGGGAAAGAAACAGAACAAACTGAAACTGTGTCAGTTCAGTCTTCAGTATTGG
GGAAGGGTGTAAAACATCGACCCCCACCAATCAAACTTCCCTCAAGCTCAGGAAATAGTTCCTCAGGTAACTATTTTACA
CCACAACAGACAAGCAGCTTTCTCAAATCTCCAACTCCTCCTCCTTCTTCTAAGCCACCAACTATTCCTCGGAAATCATC
TGTGGATCTCAATCAAGTTAGCATGCTTTCTCCAGCTGCCCTATCACCTGCCAGCTCATCACAAAGAACCACAGCCACCC
AGGTCATGGCAAACTCTGCTGGACTTAACTTCATCAATGTAGTGGGCTCTGTTTGTGGGGCCCAGGCTTTGATGAGTGGT
TCAAACCCCATGCTGGGCTGTAACACTGGTGCCATAACTCCTGCAGGAATAAACCTGAGCGGCCTTCTACCCTCAGGAGG
TCTGCTACCAAATGCATTGCCCAGTGCAATGCAGGCAGCTTCTCAAGCAGGTGTTCCATTTGGTTTAAAAAATACTTCAA
GTCTCAGGCCCTTAAATCTACTCCAGCTTCCAGGTGGTTCACTTATTTTTAACACTCTGCAGCAGCAGCAACAGCAGCTC
TCCCAGTTTACACCACAACAACCTCAGCAGCCCACAACTTCTAGTCCTCAACAGCCAGGGGAGCAGGGTTCTGAACAAGG
TTCAACCAGTCAAGAACAGGCCTTATCTGCTCAGCAAGCTGCTGTTATTAACCTTACTGGAGTAGGAAGTTTCATGCAGT
CACAGGCAGCTGTGTTGTCTCAGCTTGGCTCTGCCGAGAACAGACCTGAGCAAAGCCTTCCTCAGCAGAGATTCCAGCTC
TCCTCTGCCTTTCAACAGCAGCAGCAACAGATACAACAGTTGCGATTCTTGCAGCATCAAATGGCTATGGCAGCAGCAGC
AGCACAAACAGCTCAGCTACATCATCATCGGCATACAGGCAGCCAGTCAAAAAGTAAAATGAAGAGAGGCACGCCAACCA
CTCCAAAATTC
ATGCAACAAGCTTTAGAACTAGCTTTGGATCGTGCAGAGTATGTCATTGAAAGTGCCCGACAGAGACCTCCTAAAAGGAA
ATACCTATCAAGTGGAAGAAAATCTGTATTTCAAAAACTTTATGACTTGTATATTGAAGAATGTGAAAAAGAACCTGAGG
TTAAGAAATTAAGAAGAAATGTGAACTTGTTAGAGAAGCTTGTTATGCAAGAGACTTTGTCATGTTTAGTGGTCAATCTA
TACCCAGGAAATGAGGGATATTCGCTGATGCTCAGGGGAAAAAACGGATCAGATTCCGAGACCATTCGCCTGCCCTATGA
AGAAGGAGAGTTGCTTGAATATTTGGATGCAGAAGAATTACCTCCTATTTTGGTTGATCTCCTAGAAAAATCTCAGGTTA
ATATTTTTCATTGCGGATGTGTCATAGCAGAAATACGTGACTACAGGCAGTCCAGTAACATGAAATCTCCTGGTTACCAA
AGTCGGCACATTCTCTTACGTCCAACAATGCAGACTTTAATTTGTGATGTACATTCAATAACAAGTGATAACCACAAATG
GACCCAGGAAGACAAACTTTTGCTTGAGAGCCAGCTCATCCTAGCTACAGCTGAACCACTCTGTCTTGATCCTTCTATAG
CAGTCACCTGTACTGCAAACAGACTGCTCTATAACAAGCAAAAGATGAACACTCGCCCAATGAAACGGTGTTTCAAGAGG
TATTCCAGATCCTCTCTGAATCGGCAGCAAGATCTATCTCATTGTCCACCTCCTCCTCAGCTGAGTTACTTGATTTCTTA
CAAAAAGAAAGGAAGAAAAGCAGGTCAGCATTATGACCTCAAATCTAAGGCAGGAAATTGTGTAGATATGTGGAAACGGA
GTCCCTGTAATTTGGCCATACCTTCTGAAGTAGATGTGGAGAAGTATGCTAAAGTGGAAAAGTCTATCAAATCTGATGAC
TCACAGCCAACAGTCTGGCCTGCCCATGATGTAAAAGATGATTATGTATTTGAATGTGAAGCTAGTACTCAGTATCAGAA
AACAAAGCTGACCATCTTGCAGTCGCTTGGAGATCCACTTTACTATGGTAAAATACAGCCATGTAAAGCAGATGAAGAAA
GTGACAGCCAGATGTCTCCATCACACTCGTCCACAGATGATCATTCAAACTGGTTCATTATTGGATCAAAGACCGATGCT
GAGAGGGTAGTCAATCAGTACCAAGAATTAGTCCAGAATGAAGCCAAATGTCCGGTCAAGATGTCACACAGCTCCAGTGG
CTCAGCCAGTCTGAGTCAGGTTTCTCCAGGGAAAGAAACAGAACAAACTGAAACTGTGTCAGTTCAGTCTTCAGTATTGG
GGAAGGGTGTAAAACATCGACCCCCACCAATCAAACTTCCCTCAAGCTCAGGAAATAGTTCCTCAGGTAACTATTTTACA
CCACAACAGACAAGCAGCTTTCTCAAATCTCCAACTCCTCCTCCTTCTTCTAAGCCACCAACTATTCCTCGGAAATCATC
TGTGGATCTCAATCAAGTTAGCATGCTTTCTCCAGCTGCCCTATCACCTGCCAGCTCATCACAAAGAACCACAGCCACCC
AGGTCATGGCAAACTCTGCTGGACTTAACTTCATCAATGTAGTGGGCTCTGTTTGTGGGGCCCAGGCTTTGATGAGTGGT
TCAAACCCCATGCTGGGCTGTAACACTGGTGCCATAACTCCTGCAGGAATAAACCTGAGCGGCCTTCTACCCTCAGGAGG
TCTGCTACCAAATGCATTGCCCAGTGCAATGCAGGCAGCTTCTCAAGCAGGTGTTCCATTTGGTTTAAAAAATACTTCAA
GTCTCAGGCCCTTAAATCTACTCCAGCTTCCAGGTGGTTCACTTATTTTTAACACTCTGCAGCAGCAGCAACAGCAGCTC
TCCCAGTTTACACCACAACAACCTCAGCAGCCCACAACTTCTAGTCCTCAACAGCCAGGGGAGCAGGGTTCTGAACAAGG
TTCAACCAGTCAAGAACAGGCCTTATCTGCTCAGCAAGCTGCTGTTATTAACCTTACTGGAGTAGGAAGTTTCATGCAGT
CACAGGCAGCTGTGTTGTCTCAGCTTGGCTCTGCCGAGAACAGACCTGAGCAAAGCCTTCCTCAGCAGAGATTCCAGCTC
TCCTCTGCCTTTCAACAGCAGCAGCAACAGATACAACAGTTGCGATTCTTGCAGCATCAAATGGCTATGGCAGCAGCAGC
AGCACAAACAGCTCAGCTACATCATCATCGGCATACAGGCAGCCAGTCAAAAAGTAAAATGAAGAGAGGCACGCCAACCA
CTCCAAAATTC
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 16 .42 RPM |
| SRP007412_cerebellum | 32 .95 RPM |
| SRP007412_heart | 8 .46 RPM |
| SRP007412_kidney | 18 .83 RPM |
| SRP007412_liver | 13 .28 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Equus caballus | ENSECAG00000000116 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000102710 | ortholog_one2one | 2 retrogenes | |
| Loxodonta africana | ENSLAFG00000027507 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000003590 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000005791 | ortholog_one2one | 2 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000014609 | ortholog_one2one | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000013227 | ortholog_one2one | 1 retrogene | |
| Vicugna pacos | ENSVPAG00000007288 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_3619 | 61.87 | 63.19 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_3729 | 61.10 | 62.93 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000005288 retrocopies