Parental gene:

SUPT20H, ENSG00000102710

Aliases:SUPT20H, C13, C13orf19, FAM48A, P38IP, SPT20
Description:suppressor of Ty 20 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:20596]
Organism:Human (Homo sapiens)
Coordinates:13:37583448..37633850(-)


>ENSG00000102710
ATGCAACAAGCTTTAGAACTAGCTTTGGATCGTGCAGAGTATGTCATTGAAAGTGCCCGACAGAGACCTCCTAAAAGGAA
ATACCTATCAAGTGGAAGAAAATCTGTATTTCAAAAACTTTATGACTTGTATATTGAAGAATGTGAAAAAGAACCTGAAG
TTAAGAAATTAAGAAGAAATGTGAACTTGTTAGAGAAGCTTGTTATGCAAGAGACTTTGTCATGTTTAGTGGTCAATCTA
TACCCAGGAAATGAGGGATATTCTCTGATGCTCAGGGGAAAAAACGGATCAGATTCCGAGACCATTCGACTGCCCTATGA
AGAAGGAGAGTTGCTTGAATATTTGGATGCAGAAGAATTACCTCCTATTTTGGTTGATCTCCTAGAAAAATCTCAGGTTA
ATATTTTTCATTGCGGATGTGTCATAGCAGAAATACGTGACTACAGGCAGTCCAGTAACATGAAATCTCCTGGTTACCAA
AGTCGGCACATTCTCTTACGTCCAACAATGCAGACTTTAATTTGTGATGTACATTCAATAACAAGTGATAACCACAAATG
GACCCAGGAAGACAAACTTTTGCTTGAGAGCCAGCTCATCCTAGCTACAGCTGAACCACTCTGTCTTGATCCTTCTATAG
CAGTCACCTGCACTGCAAACAGACTGCTCTATAACAAGCAAAAGATGAACACTCGCCCAATGAAACGGTGTTTCAAGAGG
TATTCCAGATCCTCTCTGAATCGGCAGCAAGATCTATCTCATTGTCCACCTCCTCCTCAGCTGAGGTTACTTGATTTCTT
ACAAAAAAGAAAGGAAAGAAAAGCAGGTCAGCATTATGACCTCAAAATTTCTAAGGCAGGAAATTGTGTAGATATGTGGA
AACGGAGTCCCTGTAATTTGGCCATACCTTCTGAAGTAGATGTGGAGAAATATGCTAAAGTGGAAAAGTCTATCAAATCT
GATGACTCACAGCCAACAGTCTGGCCAGCCCATGATGTAAAAGATGATTATGTATTTGAATGTGAAGCTGGTACTCAGTA
TCAGAAAACAAAGCTGACCATCTTGCAGTCGCTTGGAGATCCACTTTACTATGGTAAAATACAGCCATGTAAAGCAGATG
AAGAAAGTGACAGCCAGATGTCTCCATCACACTCGTCCACAGATGATCATTCAAATTGGTTCATTATTGGATCAAAGACC
GATGCTGAGAGGGTAGTCAATCAGTACCAAGAATTAGTCCAGAATGAAGCCAAATGTCCGGTCAAGATGTCACACAGCTC
CAGTGGCTCAGCCAGTCTGAGTCAGGTTTCTCCAGGGAAAGAAACAGATCAAACTGAAACCGTGTCAGTTCAGTCTTCGG
TATTGGGGAAGGGTGTAAAACATCGACCCCCACCAATCAAACTTCCCTCAAGCTCAGGAAATAGTTCCTCAGGTAACTAT
TTTACACCACAACAGACAAGCAGCTTTCTCAAATCTCCAACTCCTCCTCCTTCTTCTAAGCCATCAAGTATTCCTCGGAA
ATCATCTGTGGATCTCAATCAAGTTAGCATGCTTTCTCCAGCTGCCCTATCACCTGCCAGCTCATCACAAAGAACCACGG
CCACCCAGGTCATGGCAAACTCTGCTGGACTTAACTTCATCAATGTAGTGGGCTCTGTTTGTGGGGCCCAGGCTTTGATG
AGTGGTTCAAACCCCATGCTGGGCTGTAACACTGGTGCCATAACTCCTGCAGGAATAAACCTGAGCGGCCTTCTACCCTC
AGGAGGTCTGCTACCAAATGCACTGCCCAGTGCAATGCAGGCAGCTTCTCAAGCAGGTGTTCCATTTGGTTTAAAAAATA
CTTCAAGTCTCAGGCCCTTAAATCTACTCCAGCTTCCAGGTGGTTCACTTATTTTTAACACTCTGCAGCAGCAGCAACAG
CAGCTCTCCCAGTTTACACCACAACAACCTCAGCAGCCCACAACTTGTAGTCCTCAACAGCCAGGGGAGCAGGGTTCTGA
GCAAGGTTCAACCAGTCAAGAACAGGCCTTATCTGCTCAGCAAGCTGCTGTTATTAACCTTACTGGAGTAGGAAGTTTTA
TGCAGTCACAGGCAGCTGTGTTGTCTCAGCTTGGCTCTGCCGAGAACAGACCTGAGCAAAGCCTTCCTCAGCAGAGATTC
CAGCTCTCCTCTGCCTTTCAACAGCAGCAGCAACAGATACAACAGTTGCGATTCTTGCAGCATCAAATGGCTATGGCAGC
AGCAGCAGCACAAACAGCTCAGCTACATCATCATCGGCATACAGGCAGCCAGTCAAAAAGTAAAATGAAGAGAGGCACGC
CAACCACTCCAAAATTTTGA

Library Parental gene expression (RPM)
bodymap2_liver 10 .08 RPM
bodymap2_lung 31 .93 RPM
bodymap2_breast 22 .45 RPM
bodymap2_adipose 18 .07 RPM
bodymap2_adrenal 33 .00 RPM
bodymap2_skeletal_muscle 19 .64 RPM
bodymap2_thyroid 37 .87 RPM
bodymap2_prostate 56 .05 RPM
bodymap2_colon 21 .71 RPM
bodymap2_testis 119 .70 RPM
bodymap2_brain 21 .78 RPM
bodymap2_heart 18 .26 RPM
bodymap2_white_blood_cells 62 .27 RPM
bodymap2_lymph_node 60 .52 RPM
bodymap2_ovary 48 .40 RPM
bodymap2_kidney 34 .87 RPM



Species Parental gene accession Homology type Retrogenes number
Equus caballus ENSECAG00000000116 ortholog_one2one 2 retrogenes
retro_ecab_1052, retro_ecab_1101,
Loxodonta africana ENSLAFG00000027507 ortholog_one2many 1 retrogene
retro_lafr_1199,
Macaca mulatta ENSMMUG00000003590 ortholog_one2one 2 retrogenes
retro_mmul_2479, retro_mmul_2555,
Pongo abelii ENSPPYG00000005288 ortholog_one2one 2 retrogenes
retro_pabe_3619, retro_pabe_3729,
Pan troglodytes ENSPTRG00000005791 ortholog_one2one 2 retrogenes
retro_ptro_3095, retro_ptro_3189,
Pteropus vampyrus ENSPVAG00000014609 ortholog_one2one 1 retrogene
retro_pvam_401,
Tarsius syrichta ENSTSYG00000013227 ortholog_one2one 1 retrogene
retro_tsyr_2160,
Vicugna pacos ENSVPAG00000007288 ortholog_one2one 1 retrogene
retro_vpac_193,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_4659 63.16 67.39
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2. retro_hsap_4794 61.54 67.39
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Download FASTA sequences of all ENSG00000102710 retrocopies