RetrogeneDB ID: | retro_pabe_3619 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | X:24487651..24489127(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM48A | ||
Ensembl ID: | ENSPPYG00000005288 | ||
Aliases: | SUPT20H, FAM48A | ||
Description: | protein FAM48A [Source:RefSeq peptide;Acc:NP_001128975] |
Percent Identity: | 61.87 % |
Parental protein coverage: | 63.19 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MQQALELALDRAEYVIESARQRPPKRKYLSSGRKSVFQKLYDLYIEECEKEP-EVKKLRRNVNLLEKLVM |
M...LE.ALDR.E..I..A.QRPP.R.Y..........KLYD.Y.EEC.KEP.....LR.NVNLLEKLV. | |
Retrocopy | MDRDLEQALDRTENIIKIAQQRPPRRRYSPRAGRTLQEKLYDIYVEECGKEPADPQELRSNVNLLEKLVR |
Parental | QETLSCLVVNLYPGNEGYSLMLRGKNGSDSETIRLPYEEGELLEYLDAEELPPILVDLLEKSQVNIFHCG |
...L.CL.VNLYPGN.GYS.ML....GS..ETIRLPYEE..LL.YLDAEELPP.L.D.L.K..VNIFH.G | |
Retrocopy | RDSLPCLLVNLYPGNQGYSVMLQREDGSFAETIRLPYEERALLDYLDAEELPPALGDVLDKASVNIFHSG |
Parental | CVIAEIRDYRQSSNMKSPGYQSRHILLRPTMQTLICDVHSITSDNHKWTQEDKLLLESQLILATAEPLCL |
CVI.E.RDYRQSSN...PGYQSRHILLRPTMQTL..DV...T.D..KW.QEDKL.LESQLILATAEPLCL | |
Retrocopy | CVIVEVRDYRQSSNLQPPGYQSRHILLRPTMQTLAHDVKMMTRDGQKWSQEDKLQLESQLILATAEPLCL |
Parental | DPSIAVTCTANRLLYNKQKMNTRPMKRCFKRYSRSSLNRQQDLSHCPPPPQLSYLISYKKKGRKAGQHYD |
DPS.AV.CTANRLLYNKQKMNT.PMKRC..RYS..S...QQ..S.CPPPP.L....S..K..RKAGQ... | |
Retrocopy | DPSVAVACTANRLLYNKQKMNTDPMKRCLQRYSWPSVKPQQEQSDCPPPPELTVSTSGQKEERKAGQPCE |
Parental | LK-SKAGNCVDMWKRSPCNLAIPSEVDVEKYAKVEKSIKSDDSQPTVWPAHDVKDDYVFECEASTQYQKT |
L...KAG.CVD.WKR.PC.LA.PSEVDVEK.AK...S....D.Q..VWPA..V.D...F..EA..Q...T | |
Retrocopy | LNIAKAGSCVDTWKRRPCDLAVPSEVDVEKLAKGYQSVTAADPQLPVWPAQEVEDPFRFAWEAGCQAWDT |
Parental | KLTILQSLGDPLYYGKIQPCKADEESDSQMSPSHSSTDDHSNWFIIGSKTDAERVVNQYQELVQNEAKCP |
K..I.QS..DPL..GKI.P.K......SQ.SP.....DDHS.....GS.TDA.R.V.Q.QE.VQ...K.P | |
Retrocopy | KPSIMQSFNDPLLCGKIRPRKKARQK-SQKSPRQPFPDDHSACPRPGSETDAGRAVSQAQESVQSKVKGP |
Parental | VKMSHSSSGSASLSQVSPGKETEQTETVSVQSSVLGKGVKHRPPPIKLPSSSGNSSSGNYFTPQQTSSFL |
.KMSHSSSG.AS.SQ.S..K..EQ...V.VQSSVLGKG.KH.PP...LPSSSG..SSGN.F.PQQ..S.L | |
Retrocopy | GKMSHSSSGPASVSQLSSWKTPEQPDPVWVQSSVLGKGEKHPPPRTQLPSSSGKISSGNSFPPQQAGSPL |
Parental | KSP |
K.P | |
Retrocopy | KRP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 16 .42 RPM |
SRP007412_cerebellum | 0 .00 RPM | 32 .95 RPM |
SRP007412_heart | 0 .00 RPM | 8 .46 RPM |
SRP007412_kidney | 0 .00 RPM | 18 .83 RPM |
SRP007412_liver | 0 .00 RPM | 13 .28 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4659 |
Pan troglodytes | retro_ptro_3095 |
Macaca mulatta | retro_mmul_2479 |
Equus caballus | retro_ecab_1052 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000000116 | 2 retrocopies | |
Homo sapiens | ENSG00000102710 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000027507 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003590 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000005288 | 2 retrocopies |
retro_pabe_3619 , retro_pabe_3729,
|
Pan troglodytes | ENSPTRG00000005791 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000014609 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013227 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000007288 | 1 retrocopy |