Parental gene:

NUDT21, ENSECAG00000001043

Aliases:None
Description:nudix (nucleoside diphosphate linked moiety X)-type motif 21 [Source:HGNC Symbol;Acc:13870]
Organism:Horse (Equus caballus)
Coordinates:3:8860566..8875914(-)


>ENSECAG00000001043
ATGTCCGTGGTGCCGCCCAATCGCTCGCAGACCGGCTGGCCCCGGGGGGTCAACCAGTTCGGCAACAAGTACATCCAGCA
GACCAAGCCCCTCACGCTGGAGCGCACCATCAACCTGTACCCTCTTACCAATTATACTTTTGGTACAAAGGAGCCCCTCT
ATGAGAAGGACAGCTCTGTTGCAGCCAGATTTCAGCGCATGAGGGAGGAATTTGATAAAATTGGCATGAGGAGGACTGTA
GAAGGGGTTCTGATTGTCCATGAGCACCGGCTGCCCCACGTGCTACTGCTGCAGCTTGGAACAACTTTCTTCAAATTACC
TGGTGGTGAACTTAACCCAGGAGAAGATGAAGTTGAAGGACTAAAACGCTTAATGACAGAGATACTGGGTCGTCAAGATG
GAGTCCTGCAAGACTGGGTCATTGATGACTGCATTGGTAACTGGTGGAGACCAAATTTTGAACCTCCTCAGTATCCATAT
ATTCCTGCACATATTACAAAACCTAAGGAGCATAAGAAGTTGTTTTTGGTCCAACTTCAAGAGAAAGCCTTGTTTGCAGT
CCCTAAAAATTACAAGCTGGTAGCTGCACCATTGTTTGAATTGTATGACAATGCACCAGGATATGGACCCATCATTTCTA
GTCTCCCTCAGCTTTTGAGCAGATTCAATTTTATATACAACTGA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 27 .75 RPM
SRP021940_embryo 55 .44 RPM
SRP021940_cerebellum 19 .89 RPM
SRP021940_testis 161 .33 RPM
SRP021940_placental_villous 29 .16 RPM
SRP021940_articular_cartilage 38 .90 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016628 ortholog_one2one 1 retrogene
retro_amel_540,
Callithrix jacchus ENSCJAG00000012724 possible_ortholog 3 retrogenes
retro_cjac_1121, retro_cjac_2211, retro_cjac_4100,
Erinaceus europaeus ENSEEUG00000003402 ortholog_one2one 1 retrogene
retro_eeur_35,
Loxodonta africana ENSLAFG00000028465 ortholog_one2one 1 retrogene
retro_lafr_610,
Myotis lucifugus ENSMLUG00000004968 ortholog_one2one 2 retrogenes
retro_mluc_1576, retro_mluc_999,
Mustela putorius furo ENSMPUG00000003451 ortholog_one2one 1 retrogene
retro_mputfur_158,
Oryctolagus cuniculus ENSOCUG00000017224 ortholog_one2one 2 retrogenes
retro_ocun_154, retro_ocun_87,
Sarcophilus harrisii ENSSHAG00000009651 ortholog_one2one 1 retrogene
retro_shar_469,
Sus scrofa ENSSSCG00000029848 possible_ortholog 2 retrogenes
retro_sscr_117, retro_sscr_185,
Tupaia belangeri ENSTBEG00000007664 ortholog_one2one 1 retrogene
retro_tbel_4003,
Vicugna pacos ENSVPAG00000003701 ortholog_one2one 2 retrogenes
retro_vpac_340, retro_vpac_605,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_292 60.99 59.47
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Download FASTA sequences of all ENSECAG00000001043 retrocopies