Parental gene: | UBE2V1, ENSECAG00000011858 |
| Aliases: | None |
| Description: | ubiquitin-conjugating enzyme E2 variant 1 [Source:HGNC Symbol;Acc:12494] |
| Organism: | Horse (Equus caballus) |
| Coordinates: | 22:38197352..38209368(-) |
>ENSECAG00000011858
GGCAGGATTGGGTCGGAGAGCAGCCTTAGGAGAGTAAAAGTCCCTCGCAATTTCCGACTGTTGGAAGAACTCGAAGAAGG
CCAGAAAGGAGTAGGAGATGGCACAGTTAGCTGGGGTCTAGAAGATGACGAAGACATGACACTTACAAGATGGACAGGGA
TGATAATTGGGCCTCCAAGAACAATTTATGAAAACCGAATATACAGCCTTAAAATAGAATGTGGACCTAAATACCCAGAA
GCACCCCCCTTTGTAAGATTTGTAACAAAAATTAATATGAATGGAGTTAATAGTTCTAATGGAGTGGTGGACCCAAGAGC
CATATCAGTGCTAGCGAAGTGGCAGAATTCCTATAGCATCAAAGTTGTCCTGCAGGAGCTCCGGCGCCTGATGATGTCTA
AAGAAAATATGAAGCTGCCCCAGCCACCAGAAGGACAGTGTTACAGCAATTAA
GGCAGGATTGGGTCGGAGAGCAGCCTTAGGAGAGTAAAAGTCCCTCGCAATTTCCGACTGTTGGAAGAACTCGAAGAAGG
CCAGAAAGGAGTAGGAGATGGCACAGTTAGCTGGGGTCTAGAAGATGACGAAGACATGACACTTACAAGATGGACAGGGA
TGATAATTGGGCCTCCAAGAACAATTTATGAAAACCGAATATACAGCCTTAAAATAGAATGTGGACCTAAATACCCAGAA
GCACCCCCCTTTGTAAGATTTGTAACAAAAATTAATATGAATGGAGTTAATAGTTCTAATGGAGTGGTGGACCCAAGAGC
CATATCAGTGCTAGCGAAGTGGCAGAATTCCTATAGCATCAAAGTTGTCCTGCAGGAGCTCCGGCGCCTGATGATGTCTA
AAGAAAATATGAAGCTGCCCCAGCCACCAGAAGGACAGTGTTACAGCAATTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP021940_synovial_membrane | 19 .99 RPM |
| SRP021940_embryo | 37 .75 RPM |
| SRP021940_cerebellum | 35 .26 RPM |
| SRP021940_testis | 56 .46 RPM |
| SRP021940_placental_villous | 35 .17 RPM |
| SRP021940_articular_cartilage | 10 .21 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Homo sapiens | ENSG00000244687 | ortholog_one2one | 4 retrogenes | |
| Macaca mulatta | ENSMMUG00000012228 | possible_ortholog | 6 retrogenes | |
| Otolemur garnettii | ENSOGAG00000025894 | possible_ortholog | 12 retrogenes | |
| Pan troglodytes | ENSPTRG00000013615 | possible_ortholog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000025580 | possible_ortholog | 21 retrogenes |
retro_rnor_1014, retro_rnor_1032, retro_rnor_1291, retro_rnor_1609, retro_rnor_1649, retro_rnor_1650, retro_rnor_1651, retro_rnor_2055, retro_rnor_2282, retro_rnor_2406, retro_rnor_2407, retro_rnor_2412, retro_rnor_2488, retro_rnor_2489, retro_rnor_2490, retro_rnor_2534, retro_rnor_2535, retro_rnor_2905, retro_rnor_819, retro_rnor_881, retro_rnor_991,
|
| Ictidomys tridecemlineatus | ENSSTOG00000014322 | possible_ortholog | 6 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ecab_250 | 55.22 | 86.67 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ecab_900 | 57.86 | 92.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ecab_1112 | 73.08 | 68.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSECAG00000011858 retrocopies