Parental gene:

Ube2v1, ENSRNOG00000025580

Aliases:None
Description:ubiquitin-conjugating enzyme E2 variant 1 [Source:RefSeq peptide;Acc:NP_001103815]
Organism:Rat (Rattus norvegicus)
Coordinates:3:170494657..170517510(-)


>ENSRNOG00000025580
ATGGCAGCCACCACAGGCTCGGGAGTAAAAGTCCCTCGAAATTTCCGACTGTTGGAAGAGCTGGAAGAAGGCCAGAAAGG
AGTAGGCGACGGCACAGTTAGCTGGGGTCTGGAGGACGACGAGGACATGACGCTCACAAGATGGACAGGCATGATAATTG
GGCCTCCACGAACAATTTATGAAAACCGAATATACAGCCTTAAGATAGAGTGTGGGCCTAAGTATCCAGAAGCACCCCCG
TCTGTGAGATTTGTAACAAGAGTCAATATGAGTGGCGTGAGCAGTTCCAATGGAGTGGTGGATCCACGAGCCACAGCAGT
GCTGGCAAAGTGGCAGAATTCCCACAGCATCAAAGTCATCCTGCAGGAACTGAGGCGCTTGATGATGTCAAAAGAGAACA
TGAAGCTGCCACAGCCACCAGAAGGACAGTGTTACAGCAATTAG

Library Parental gene expression (RPM)
SRP017611_brain 17 .83 RPM
SRP017611_kidney 10 .19 RPM
SRP017611_liver 6 .99 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000027316 ortholog_one2many 4 retrogenes
retro_btau_1196, retro_btau_1226, retro_btau_1307, retro_btau_415,
Canis familiaris ENSCAFG00000032244 possible_ortholog 8 retrogenes
retro_cfam_1005, retro_cfam_1066, retro_cfam_1299, retro_cfam_1340, retro_cfam_1499, retro_cfam_2186, retro_cfam_494, retro_cfam_604,
Callithrix jacchus ENSCJAG00000036984 ortholog_one2many 10 retrogenes
retro_cjac_1076, retro_cjac_1952, retro_cjac_2810, retro_cjac_2865, retro_cjac_3081, retro_cjac_3140, retro_cjac_3258, retro_cjac_4089, retro_cjac_462, retro_cjac_974,
Equus caballus ENSECAG00000011858 possible_ortholog 3 retrogenes
retro_ecab_1112, retro_ecab_250, retro_ecab_900,
Homo sapiens ENSG00000244687 possible_ortholog 4 retrogenes
retro_hsap_2175, retro_hsap_2440, retro_hsap_2884, retro_hsap_4192,
Loxodonta africana ENSLAFG00000027359 ortholog_one2many 2 retrogenes
retro_lafr_1026, retro_lafr_1221,
Macaca mulatta ENSMMUG00000012228 possible_ortholog 6 retrogenes
retro_mmul_1722, retro_mmul_2382, retro_mmul_351, retro_mmul_436, retro_mmul_629, retro_mmul_907,
Mustela putorius furo ENSMPUG00000017557 ortholog_one2many 3 retrogenes
retro_mputfur_1522, retro_mputfur_384, retro_mputfur_834,
Nomascus leucogenys ENSNLEG00000006987 ortholog_one2many 8 retrogenes
retro_nleu_1554, retro_nleu_1612, retro_nleu_1996, retro_nleu_2206, retro_nleu_2773, retro_nleu_3025, retro_nleu_304, retro_nleu_566,
Oryctolagus cuniculus ENSOCUG00000026172 possible_ortholog 4 retrogenes
retro_ocun_1450, retro_ocun_1481, retro_ocun_454, retro_ocun_539,
Otolemur garnettii ENSOGAG00000025894 possible_ortholog 12 retrogenes
retro_ogar_1381, retro_ogar_1391, retro_ogar_153, retro_ogar_1637, retro_ogar_1929, retro_ogar_2027, retro_ogar_2478, retro_ogar_2984, retro_ogar_3172, retro_ogar_3338, retro_ogar_620, retro_ogar_80,
Pan troglodytes ENSPTRG00000013615 ortholog_many2many 1 retrogene
retro_ptro_64,
Rattus norvegicus ENSRNOG00000001829 within_species_paralog 1 retrogene
retro_rnor_1181,
Sus scrofa ENSSSCG00000030632 ortholog_one2many 1 retrogene
retro_sscr_431,
Ictidomys tridecemlineatus ENSSTOG00000014322 possible_ortholog 6 retrogenes
retro_itri_1001, retro_itri_1002, retro_itri_1134, retro_itri_1452, retro_itri_1600, retro_itri_992,
Tarsius syrichta ENSTSYG00000002511 possible_ortholog 1 retrogene
retro_tsyr_261,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_819 80.54 100.00
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2. retro_rnor_881 81.33 100.00
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3. retro_rnor_991 100.00 100.00
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4. retro_rnor_1014 87.07 100.00
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5. retro_rnor_1032 100.00 100.00
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6. retro_rnor_1291 73.86 57.82
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7. retro_rnor_1609 96.60 100.00
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8. retro_rnor_1649 84.35 100.00
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9. retro_rnor_1650 85.03 100.00
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10. retro_rnor_1651 84.35 100.00
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11. retro_rnor_2055 61.70 94.56
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12. retro_rnor_2282 83.78 100.00
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13. retro_rnor_2406 85.03 100.00
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14. retro_rnor_2407 89.92 87.07
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15. retro_rnor_2412 85.03 100.00
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16. retro_rnor_2488 88.51 100.00
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17. retro_rnor_2489 86.58 100.00
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18. retro_rnor_2490 83.11 100.00
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19. retro_rnor_2534 84.46 100.00
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20. retro_rnor_2535 85.14 100.00
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21. retro_rnor_2905 92.52 100.00
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Download FASTA sequences of all ENSRNOG00000025580 retrocopies