Parental gene: | Ube2v1, ENSRNOG00000025580 |
| Aliases: | None |
| Description: | ubiquitin-conjugating enzyme E2 variant 1 [Source:RefSeq peptide;Acc:NP_001103815] |
| Organism: | Rat (Rattus norvegicus) |
| Coordinates: | 3:170494657..170517510(-) |
>ENSRNOG00000025580
ATGGCAGCCACCACAGGCTCGGGAGTAAAAGTCCCTCGAAATTTCCGACTGTTGGAAGAGCTGGAAGAAGGCCAGAAAGG
AGTAGGCGACGGCACAGTTAGCTGGGGTCTGGAGGACGACGAGGACATGACGCTCACAAGATGGACAGGCATGATAATTG
GGCCTCCACGAACAATTTATGAAAACCGAATATACAGCCTTAAGATAGAGTGTGGGCCTAAGTATCCAGAAGCACCCCCG
TCTGTGAGATTTGTAACAAGAGTCAATATGAGTGGCGTGAGCAGTTCCAATGGAGTGGTGGATCCACGAGCCACAGCAGT
GCTGGCAAAGTGGCAGAATTCCCACAGCATCAAAGTCATCCTGCAGGAACTGAGGCGCTTGATGATGTCAAAAGAGAACA
TGAAGCTGCCACAGCCACCAGAAGGACAGTGTTACAGCAATTAG
ATGGCAGCCACCACAGGCTCGGGAGTAAAAGTCCCTCGAAATTTCCGACTGTTGGAAGAGCTGGAAGAAGGCCAGAAAGG
AGTAGGCGACGGCACAGTTAGCTGGGGTCTGGAGGACGACGAGGACATGACGCTCACAAGATGGACAGGCATGATAATTG
GGCCTCCACGAACAATTTATGAAAACCGAATATACAGCCTTAAGATAGAGTGTGGGCCTAAGTATCCAGAAGCACCCCCG
TCTGTGAGATTTGTAACAAGAGTCAATATGAGTGGCGTGAGCAGTTCCAATGGAGTGGTGGATCCACGAGCCACAGCAGT
GCTGGCAAAGTGGCAGAATTCCCACAGCATCAAAGTCATCCTGCAGGAACTGAGGCGCTTGATGATGTCAAAAGAGAACA
TGAAGCTGCCACAGCCACCAGAAGGACAGTGTTACAGCAATTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 6 .99 RPM |
| SRP017611_kidney | 10 .19 RPM |
| SRP017611_brain | 17 .83 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000027316 | ortholog_one2many | 4 retrogenes | |
| Canis familiaris | ENSCAFG00000032244 | possible_ortholog | 8 retrogenes | |
| Callithrix jacchus | ENSCJAG00000036984 | ortholog_one2many | 10 retrogenes | |
| Equus caballus | ENSECAG00000011858 | possible_ortholog | 3 retrogenes | |
| Homo sapiens | ENSG00000244687 | possible_ortholog | 4 retrogenes | |
| Loxodonta africana | ENSLAFG00000027359 | ortholog_one2many | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000012228 | possible_ortholog | 6 retrogenes | |
| Mustela putorius furo | ENSMPUG00000017557 | ortholog_one2many | 3 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000006987 | ortholog_one2many | 8 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000026172 | possible_ortholog | 4 retrogenes | |
| Otolemur garnettii | ENSOGAG00000025894 | possible_ortholog | 12 retrogenes | |
| Pan troglodytes | ENSPTRG00000013615 | ortholog_many2many | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000001829 | within_species_paralog | 1 retrogene | |
| Sus scrofa | ENSSSCG00000030632 | ortholog_one2many | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000014322 | possible_ortholog | 6 retrogenes | |
| Tarsius syrichta | ENSTSYG00000002511 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_rnor_819 | 80.54 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_rnor_881 | 81.33 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_rnor_991 | 100.00 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_rnor_1014 | 87.07 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_rnor_1032 | 100.00 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_rnor_1291 | 73.86 | 57.82 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_rnor_1609 | 96.60 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_rnor_1649 | 84.35 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_rnor_1650 | 85.03 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_rnor_1651 | 84.35 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 11. | retro_rnor_2055 | 61.70 | 94.56 | Please wait, loading | Please wait, loading | Please wait, loading |
| 12. | retro_rnor_2282 | 83.78 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 13. | retro_rnor_2406 | 85.03 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 14. | retro_rnor_2407 | 89.92 | 87.07 | Please wait, loading | Please wait, loading | Please wait, loading |
| 15. | retro_rnor_2412 | 85.03 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 16. | retro_rnor_2488 | 88.51 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 17. | retro_rnor_2489 | 86.58 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 18. | retro_rnor_2490 | 83.11 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 19. | retro_rnor_2534 | 84.46 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 20. | retro_rnor_2535 | 85.14 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 21. | retro_rnor_2905 | 92.52 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSRNOG00000025580 retrocopies