RetrogeneDB ID: | retro_rnor_2490 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 7:1451656..1452100(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ube2v1 | ||
Ensembl ID: | ENSRNOG00000025580 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2 variant 1 [Source:RefSeq peptide;Acc:NP_001103815] |
Percent Identity: | 83.11 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | MAATTGSGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIE |
MAATTGSG.KV...F.LLEELEEGQKGVG..TVS.GLEDDEDMTLTRWTGMIIGP..TIYENRIYSLKIE | |
Retrocopy | MAATTGSGIKVLQDFQLLEELEEGQKGVGKSTVS*GLEDDEDMTLTRWTGMIIGPLQTIYENRIYSLKIE |
Parental | CGPK-YPEAPPSVRFVTRVNMSGVSSSNGVVDPRATAVLAKWQNSHSIKVILQELRRLMMSKENMKLPQP |
CGP..YPEA..SVRFVTRVNM.G.SSSNGVVDP.A.AVLAK.QN.HSIKVILQELRRLMMSKE.MKLPQP | |
Retrocopy | CGPL*YPEASQSVRFVTRVNMNGLSSSNGVVDPQAMAVLAK*QNCHSIKVILQELRRLMMSKEDMKLPQP |
Parental | PEGQCYSN |
.EGQ.Y.. | |
Retrocopy | REGQSYNH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 17 .83 RPM |
SRP017611_kidney | 0 .00 RPM | 10 .19 RPM |
SRP017611_liver | 0 .00 RPM | 6 .99 RPM |