Parental gene:

ENSECAG00000021116

Aliases:None
Description:Profilin [Source:UniProtKB/TrEMBL;Acc:F6UJ33]
Organism:Horse (Equus caballus)
Coordinates:11:49576782..49579505(+)


>ENSECAG00000021116
ATGGCCGGGTGGAACGCCTACATCGACAACCTCATGGCGGACGGGACCTGTCAGGACGCGGCCATCGTGGGCTATAAGGA
CTCGCCCTCCGTCTGGGCCGCCGTCCCCGGGAAAACCTTCGTCAACATCACGCCAGCTGAGGTTGGTGTCCTGGTTGGCA
AAGACCGGTCAAGTTTTTTCGTGAATGGGCTGACACTTGGGGGCCAGAAATGTTCTGTGATCCGGGACTCACTGCTGCAG
GATGGAGAATTTACCATGGATCTTCGTACCAAGAGCACCGGCGGAGCCCCCACCTTCAACATCACTGTCACCATGACTGC
CAAGACGCTAGTCCTGCTGATGGGCAAAGAAGGTGTCCACGGTGGTATGATCAACAAGAAATGTTATGAAATGGCCTCCC
ACCTGCGGCGTTCCCAGTACTGA

Library Parental gene expression (RPM)
SRP021940_articular_cartilage 34 .71 RPM
SRP021940_cerebellum 60 .09 RPM
SRP021940_embryo 145 .53 RPM
SRP021940_placental_villous 161 .12 RPM
SRP021940_synovial_membrane 176 .43 RPM
SRP021940_testis 72 .90 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006193 possible_ortholog 2 retrogenes
retro_amel_1712, retro_amel_1781,
Callithrix jacchus ENSCJAG00000011719 ortholog_one2many 2 retrogenes
retro_cjac_1023, retro_cjac_1641,
Cavia porcellus ENSCPOG00000013136 ortholog_one2many 1 retrogene
retro_cpor_1216,
Dasypus novemcinctus ENSDNOG00000011649 possible_ortholog 2 retrogenes
retro_dnov_1762, retro_dnov_485,
Homo sapiens ENSG00000108518 ortholog_one2many 10 retrogenes
retro_hsap_214, retro_hsap_215, retro_hsap_221, retro_hsap_223, retro_hsap_224, retro_hsap_352, retro_hsap_446, retro_hsap_447, retro_hsap_450, retro_hsap_451,
Gorilla gorilla ENSGGOG00000022394 ortholog_one2many 3 retrogenes
retro_ggor_285, retro_ggor_289, retro_ggor_366,
Macaca mulatta ENSMMUG00000002772 ortholog_one2many 5 retrogenes
retro_mmul_407, retro_mmul_527, retro_mmul_528, retro_mmul_574, retro_mmul_732,
Mus musculus ENSMUSG00000018293 ortholog_one2many 1 retrogene
retro_mmus_1326,
Nomascus leucogenys ENSNLEG00000017446 ortholog_many2many 6 retrogenes
retro_nleu_16, retro_nleu_1870, retro_nleu_2425, retro_nleu_2429, retro_nleu_848, retro_nleu_886,
Otolemur garnettii ENSOGAG00000031395 ortholog_one2many 3 retrogenes
retro_ogar_1680, retro_ogar_2143, retro_ogar_3351,
Procavia capensis ENSPCAG00000000291 ortholog_one2many 1 retrogene
retro_pcap_27,
Pelodiscus sinensis ENSPSIG00000004124 ortholog_one2many 1 retrogene
retro_psin_8,
Pan troglodytes ENSPTRG00000008616 ortholog_one2many 5 retrogenes
retro_ptro_185, retro_ptro_196, retro_ptro_276, retro_ptro_332, retro_ptro_333,
Rattus norvegicus ENSRNOG00000003975 ortholog_many2many 1 retrogene
retro_rnor_1623,
Sus scrofa ENSSSCG00000017905 ortholog_one2one 1 retrogene
retro_sscr_275,
Ictidomys tridecemlineatus ENSSTOG00000028950 ortholog_one2many 1 retrogene
retro_itri_129,
Tursiops truncatus ENSTTRG00000001299 ortholog_one2one 1 retrogene
retro_ttru_14,
Vicugna pacos ENSVPAG00000005327 ortholog_one2one 3 retrogenes
retro_vpac_389, retro_vpac_395, retro_vpac_457,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_28 96.43 100.00
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2. retro_ecab_171 92.14 100.00
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3. retro_ecab_559 69.35 86.43
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Download FASTA sequences of all ENSECAG00000021116 retrocopies