Parental gene:

ENSEEUG00000005630

Aliases:None
Description:None
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_418:136519..144704(+)


>ENSEEUG00000005630
ATGGCCGCCTACAAGCTGGTGCTTATCCGGCACGGCGAGAGCGCTTGGAACCTGGAGAACCGCTTCAGCGGCTGGTACGA
CGCGGACCTGAGCCCAGCCGGACACGAGGAGGCCAAGCGCGGCGGCCGGGCGCTGCGAGATGCTGGCTATGAGTTTGACA
TCTGCTTCACCTCAGTGCAGAAGAGAGCAATCCGCACTCTCTGGACGGTGTTGGATGCTATTGACCAAATGTGGCTGCCA
GTAGTGAGGACTTGGCGCCTCAATGAGCGGCACTATGGGGGCCTGACTGGCCTCAATAAAGCTGAAACTGCTGCCAAGCA
TGGAGAGGCCCAGGTAAAGATCTGGAGGCGCTCCTATGATGTCCCACCACCTCCGATGGAGCCTGATCATCCCTTCTACA
GCACCATCAGTAAGGACCGTAGATATGCTGACCTTACCGAAGATCAGCTTCCCTCCTGTGAGAGTCTGAAGGACACTATT
GCCAGAGCTCTGCCCTTTTGGAATGAAGAGATTGTTCCCCAGATCAAGGAGGGGAAACGGGTACTGATCGCAGCACACGG
CAATAGTCTGCGGGGAATTGTTAAGCATCTGGAGGGTCTCTCTGAAGAGGCTATCATGGAGTTGAACCTGCCAACTGGTA
TCCCCATTGTCTATGAATTGGACAAGAACTTGAAGCCCATCAAGCCCATGCAGTTCCTGGGGGATGAAGAGACCGTGCGA
AAAGCCATGGAAGCTGTGGCAGCCCAGGGCAAAGTCAAGAAATGA

Library Parental gene expression (RPM)
SRP017611_liver 51 .13 RPM
SRP017611_kidney 145 .53 RPM
SRP017611_brain 176 .94 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000012697 possible_ortholog 2 retrogenes
retro_btau_1611, retro_btau_472,
Canis familiaris ENSCAFG00000009062 possible_ortholog 1 retrogene
retro_cfam_1297,
Callithrix jacchus ENSCJAG00000016575 possible_ortholog 1 retrogene
retro_cjac_370,
Cavia porcellus ENSCPOG00000006844 possible_ortholog 4 retrogenes
retro_cpor_158, retro_cpor_539, retro_cpor_605, retro_cpor_660,
Echinops telfairi ENSETEG00000002467 possible_ortholog 1 retrogene
retro_etel_1595,
Homo sapiens ENSG00000171314 possible_ortholog 12 retrogenes
retro_hsap_1048, retro_hsap_1052, retro_hsap_1142, retro_hsap_2235, retro_hsap_2604, retro_hsap_3083, retro_hsap_3488, retro_hsap_4249, retro_hsap_4686, retro_hsap_4821, retro_hsap_885, retro_hsap_913,
Gorilla gorilla ENSGGOG00000028602 ortholog_one2one 13 retrogenes
retro_ggor_1220, retro_ggor_1500, retro_ggor_1667, retro_ggor_1824, retro_ggor_2061, retro_ggor_2118, retro_ggor_2353, retro_ggor_2849, retro_ggor_3005, retro_ggor_3034, retro_ggor_716, retro_ggor_738, retro_ggor_827,
Macaca mulatta ENSMMUG00000020027 possible_ortholog 1 retrogene
retro_mmul_119,
Monodelphis domestica ENSMODG00000004242 possible_ortholog 4 retrogenes
retro_mdom_1342, retro_mdom_1893, retro_mdom_610, retro_mdom_668,
Mus musculus ENSMUSG00000011752 ortholog_one2one 6 retrogenes
retro_mmus_1741, retro_mmus_2221, retro_mmus_3012, retro_mmus_411, retro_mmus_729, retro_mmus_769,
Pongo abelii ENSPPYG00000002530 possible_ortholog 9 retrogenes
retro_pabe_1325, retro_pabe_2309, retro_pabe_2554, retro_pabe_2639, retro_pabe_2881, retro_pabe_3389, retro_pabe_3639, retro_pabe_3749, retro_pabe_671,
Rattus norvegicus ENSRNOG00000050585 ortholog_one2many 7 retrogenes
retro_rnor_1669, retro_rnor_2241, retro_rnor_2275, retro_rnor_2361, retro_rnor_2568, retro_rnor_691, retro_rnor_703,
Sarcophilus harrisii ENSSHAG00000018230 ortholog_one2one 1 retrogene
retro_shar_323,
Drosophila melanogaster FBgn0014869 ortholog_many2many 1 retrogene
retro_dmel_57,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_680 94.14 86.22
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Download FASTA sequences of all ENSEEUG00000005630 retrocopies