Parental gene: | PGAM1, ENSG00000171314 |
| Aliases: | PGAM1, HEL-S-35, PGAM-B, PGAMA |
| Description: | phosphoglycerate mutase 1 (brain) [Source:HGNC Symbol;Acc:8888] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 10:99185916..99193198(+) |
>ENSG00000171314
ATGGCCGCCTACAAACTGGTGCTGATCCGGCACGGCGAGAGCGCATGGAACCTGGAGAACCGCTTCAGCGGCTGGTACGA
CGCCGACCTGAGCCCGGCGGGCCACGAGGAGGCGAAGCGCGGCGGGCAGGCGCTACGAGATGCTGGCTATGAGTTTGACA
TCTGCTTCACCTCAGTGCAGAAGAGAGCGATCCGGACCCTCTGGACAGTGCTAGATGCCATTGATCAGATGTGGCTGCCA
GTGGTGAGGACTTGGCGCCTCAATGAGCGGCACTATGGGGGTCTAACCGGTCTCAATAAAGCAGAAACTGCTGCAAAGCA
TGGTGAGGCCCAGGTGAAGATCTGGAGGCGCTCCTATGATGTCCCACCACCTCCGATGGAGCCCGACCATCCTTTCTACA
GCAACATCAGTAAGGATCGCAGGTATGCAGACCTCACAGAAGATCAGCTACCCTCCTGTGAGAGTCTGAAGGATACTATT
GCCAGAGCTCTGCCCTTCTGGAATGAAGAAATAGTTCCCCAGATCAAGGAGGGGAAACGTGTACTGATTGCAGCCCATGG
CAACAGCCTCCGGGGCATTGTCAAGCATCTGGAGGGTCTCTCTGAAGAGGCTATCATGGAGCTGAACCTGCCGACTGGTA
TTCCCATTGTCTATGAATTGGACAAGAACTTGAAGCCTATCAAGCCCATGCAGTTTCTGGGGGATGAAGAGACGGTGCGC
AAAGCCATGGAAGCTGTGGCTGCCCAGGGCAAGGCCAAGAAGTGA
ATGGCCGCCTACAAACTGGTGCTGATCCGGCACGGCGAGAGCGCATGGAACCTGGAGAACCGCTTCAGCGGCTGGTACGA
CGCCGACCTGAGCCCGGCGGGCCACGAGGAGGCGAAGCGCGGCGGGCAGGCGCTACGAGATGCTGGCTATGAGTTTGACA
TCTGCTTCACCTCAGTGCAGAAGAGAGCGATCCGGACCCTCTGGACAGTGCTAGATGCCATTGATCAGATGTGGCTGCCA
GTGGTGAGGACTTGGCGCCTCAATGAGCGGCACTATGGGGGTCTAACCGGTCTCAATAAAGCAGAAACTGCTGCAAAGCA
TGGTGAGGCCCAGGTGAAGATCTGGAGGCGCTCCTATGATGTCCCACCACCTCCGATGGAGCCCGACCATCCTTTCTACA
GCAACATCAGTAAGGATCGCAGGTATGCAGACCTCACAGAAGATCAGCTACCCTCCTGTGAGAGTCTGAAGGATACTATT
GCCAGAGCTCTGCCCTTCTGGAATGAAGAAATAGTTCCCCAGATCAAGGAGGGGAAACGTGTACTGATTGCAGCCCATGG
CAACAGCCTCCGGGGCATTGTCAAGCATCTGGAGGGTCTCTCTGAAGAGGCTATCATGGAGCTGAACCTGCCGACTGGTA
TTCCCATTGTCTATGAATTGGACAAGAACTTGAAGCCTATCAAGCCCATGCAGTTTCTGGGGGATGAAGAGACGGTGCGC
AAAGCCATGGAAGCTGTGGCTGCCCAGGGCAAGGCCAAGAAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 17 .30 RPM |
| bodymap2_lung | 24 .98 RPM |
| bodymap2_breast | 22 .74 RPM |
| bodymap2_adipose | 19 .84 RPM |
| bodymap2_adrenal | 25 .01 RPM |
| bodymap2_skeletal_muscle | 3 .98 RPM |
| bodymap2_thyroid | 16 .06 RPM |
| bodymap2_prostate | 27 .40 RPM |
| bodymap2_colon | 22 .08 RPM |
| bodymap2_testis | 23 .06 RPM |
| bodymap2_brain | 35 .75 RPM |
| bodymap2_heart | 24 .70 RPM |
| bodymap2_white_blood_cells | 37 .03 RPM |
| bodymap2_lymph_node | 22 .86 RPM |
| bodymap2_ovary | 26 .16 RPM |
| bodymap2_kidney | 27 .55 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000012697 | possible_ortholog | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000009062 | possible_ortholog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000016575 | ortholog_one2one | 1 retrogene | |
| Erinaceus europaeus | ENSEEUG00000005630 | possible_ortholog | 1 retrogene | |
| Echinops telfairi | ENSETEG00000002467 | possible_ortholog | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000028602 | possible_ortholog | 13 retrogenes | |
| Loxodonta africana | ENSLAFG00000015979 | ortholog_one2many | 1 retrogene | |
| Microcebus murinus | ENSMICG00000007657 | possible_ortholog | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000009117 | possible_ortholog | 6 retrogenes | |
| Macaca mulatta | ENSMMUG00000020027 | possible_ortholog | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000004242 | possible_ortholog | 4 retrogenes | |
| Mustela putorius furo | ENSMPUG00000017045 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000011752 | possible_ortholog | 6 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000013804 | possible_ortholog | 10 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000005679 | possible_ortholog | 5 retrogenes | |
| Pongo abelii | ENSPPYG00000002530 | ortholog_one2one | 9 retrogenes | |
| Rattus norvegicus | ENSRNOG00000050585 | possible_ortholog | 7 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000018230 | possible_ortholog | 1 retrogene | |
| Sus scrofa | ENSSSCG00000010517 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000005913 | possible_ortholog | 5 retrogenes | |
| Drosophila melanogaster | FBgn0014869 | ortholog_many2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_885 | 95.33 | 59.06 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_hsap_913 | 78.61 | 78.74 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_hsap_1048 | 85.71 | 95.28 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_hsap_1052 | 99.61 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_hsap_1142 | 100.00 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_hsap_2235 | 79.68 | 97.24 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_hsap_2604 | 88.78 | 80.31 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_hsap_3083 | 57.59 | 61.81 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_hsap_3488 | 84.28 | 90.16 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_hsap_4249 | 77.64 | 62.99 | Please wait, loading | Please wait, loading | Please wait, loading |
| 11. | retro_hsap_4686 | 75.86 | 79.53 | Please wait, loading | Please wait, loading | Please wait, loading |
| 12. | retro_hsap_4821 | 78.08 | 57.09 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000171314 retrocopies