RetrogeneDB ID: | retro_hsap_1052 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 12:104424556..104425318(+) | ||
Located in intron of: | ENSG00000120820 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000216285 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PGAM1 | ||
Ensembl ID: | ENSG00000171314 | ||
Aliases: | PGAM1, HEL-S-35, PGAM-B, PGAMA | ||
Description: | phosphoglycerate mutase 1 (brain) [Source:HGNC Symbol;Acc:8888] |
Percent Identity: | 99.61 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAAYKLVLIRHGESAWNLENRFSGWYDADLSPAGHEEAKRGGQALRDAGYEFDICFTSVQKRAIRTLWTV |
MAAYKLVLIRHGESAWNLENRFSGWYDADLSPAGHEEAKRGGQALRDAGYEFDICFTSVQKRAIRTLWTV | |
Retrocopy | MAAYKLVLIRHGESAWNLENRFSGWYDADLSPAGHEEAKRGGQALRDAGYEFDICFTSVQKRAIRTLWTV |
Parental | LDAIDQMWLPVVRTWRLNERHYGGLTGLNKAETAAKHGEAQVKIWRRSYDVPPPPMEPDHPFYSNISKDR |
LDAIDQMWLPVVRTWRLNERHYGGLTGLNKAETAAKH.EAQVKIWRRSYDVPPPPMEPDHPFYSNISKDR | |
Retrocopy | LDAIDQMWLPVVRTWRLNERHYGGLTGLNKAETAAKHCEAQVKIWRRSYDVPPPPMEPDHPFYSNISKDR |
Parental | RYADLTEDQLPSCESLKDTIARALPFWNEEIVPQIKEGKRVLIAAHGNSLRGIVKHLEGLSEEAIMELNL |
RYADLTEDQLPSCESLKDTIARALPFWNEEIVPQIKEGKRVLIAAHGNSLRGIVKHLEGLSEEAIMELNL | |
Retrocopy | RYADLTEDQLPSCESLKDTIARALPFWNEEIVPQIKEGKRVLIAAHGNSLRGIVKHLEGLSEEAIMELNL |
Parental | PTGIPIVYELDKNLKPIKPMQFLGDEETVRKAMEAVAAQGKAKK |
PTGIPIVYELDKNLKPIKPMQFLGDEETVRKAMEAVAAQGKAKK | |
Retrocopy | PTGIPIVYELDKNLKPIKPMQFLGDEETVRKAMEAVAAQGKAKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .04 RPM | 19 .84 RPM |
bodymap2_adrenal | 0 .02 RPM | 25 .01 RPM |
bodymap2_brain | 0 .02 RPM | 35 .75 RPM |
bodymap2_breast | 0 .02 RPM | 22 .74 RPM |
bodymap2_colon | 0 .02 RPM | 22 .08 RPM |
bodymap2_heart | 0 .00 RPM | 24 .70 RPM |
bodymap2_kidney | 0 .08 RPM | 27 .55 RPM |
bodymap2_liver | 0 .00 RPM | 17 .30 RPM |
bodymap2_lung | 0 .02 RPM | 24 .98 RPM |
bodymap2_lymph_node | 0 .05 RPM | 22 .86 RPM |
bodymap2_ovary | 0 .12 RPM | 26 .16 RPM |
bodymap2_prostate | 0 .00 RPM | 27 .40 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 3 .98 RPM |
bodymap2_testis | 0 .06 RPM | 23 .06 RPM |
bodymap2_thyroid | 0 .00 RPM | 16 .06 RPM |
bodymap2_white_blood_cells | 0 .04 RPM | 37 .03 RPM |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .36 RPM |
CEU_NA11843 | 0 .20 RPM |
CEU_NA11930 | 0 .49 RPM |
CEU_NA12004 | 0 .04 RPM |
CEU_NA12400 | 0 .11 RPM |
CEU_NA12751 | 0 .15 RPM |
CEU_NA12760 | 0 .81 RPM |
CEU_NA12827 | 0 .19 RPM |
CEU_NA12872 | 0 .30 RPM |
CEU_NA12873 | 0 .35 RPM |
FIN_HG00183 | 0 .38 RPM |
FIN_HG00277 | 0 .55 RPM |
FIN_HG00315 | 0 .19 RPM |
FIN_HG00321 | 0 .12 RPM |
FIN_HG00328 | 0 .12 RPM |
FIN_HG00338 | 0 .11 RPM |
FIN_HG00349 | 0 .51 RPM |
FIN_HG00375 | 0 .27 RPM |
FIN_HG00377 | 0 .15 RPM |
FIN_HG00378 | 0 .17 RPM |
GBR_HG00099 | 0 .23 RPM |
GBR_HG00111 | 0 .13 RPM |
GBR_HG00114 | 0 .29 RPM |
GBR_HG00119 | 0 .29 RPM |
GBR_HG00131 | 0 .26 RPM |
GBR_HG00133 | 0 .22 RPM |
GBR_HG00134 | 0 .13 RPM |
GBR_HG00137 | 0 .22 RPM |
GBR_HG00142 | 0 .03 RPM |
GBR_HG00143 | 0 .13 RPM |
TSI_NA20512 | 0 .28 RPM |
TSI_NA20513 | 0 .10 RPM |
TSI_NA20518 | 0 .64 RPM |
TSI_NA20532 | 0 .20 RPM |
TSI_NA20538 | 0 .28 RPM |
TSI_NA20756 | 0 .41 RPM |
TSI_NA20765 | 0 .21 RPM |
TSI_NA20771 | 0 .40 RPM |
TSI_NA20786 | 0 .26 RPM |
TSI_NA20798 | 0 .06 RPM |
YRI_NA18870 | 0 .54 RPM |
YRI_NA18907 | 0 .38 RPM |
YRI_NA18916 | 0 .17 RPM |
YRI_NA19093 | 0 .31 RPM |
YRI_NA19099 | 0 .45 RPM |
YRI_NA19114 | 0 .26 RPM |
YRI_NA19118 | 0 .27 RPM |
YRI_NA19213 | 0 .33 RPM |
YRI_NA19214 | 0 .10 RPM |
YRI_NA19223 | 0 .12 RPM |