Parental gene: | SNRPF, ENSEEUG00000013509 |
| Aliases: | None |
| Description: | small nuclear ribonucleoprotein polypeptide F [Source:HGNC Symbol;Acc:11162] |
| Organism: | Hedgehog (Erinaceus europaeus) |
| Coordinates: | GeneScaffold_4344:532..6246(+) |
>ENSEEUG00000013509
AGTTTACCCCTCAATCCCAAACCTTTCCTCAACGGACTAACAGGAAAACCAGTAATGGTGAAGCTTAAGTGGGGAATGGA
GTACAAGGGCTACCTGGTATCTGTAGATGGCTATATGAATATGCAGCTTGCAAATACTGAAGAATACATAGATGGAGCAT
TGTCGGGACATCTGGGTGAAGTTTTAATAAGGTGTAATAATGTCCTTTATATCAGAGGGGTTGAAGAAGAGGAAGAAGAT
GGAGAAATGAGAGAATAG
AGTTTACCCCTCAATCCCAAACCTTTCCTCAACGGACTAACAGGAAAACCAGTAATGGTGAAGCTTAAGTGGGGAATGGA
GTACAAGGGCTACCTGGTATCTGTAGATGGCTATATGAATATGCAGCTTGCAAATACTGAAGAATACATAGATGGAGCAT
TGTCGGGACATCTGGGTGAAGTTTTAATAAGGTGTAATAATGTCCTTTATATCAGAGGGGTTGAAGAAGAGGAAGAAGAT
GGAGAAATGAGAGAATAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 19 .29 RPM |
| SRP017611_kidney | 23 .07 RPM |
| SRP017611_brain | 8 .70 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000002166 | ortholog_one2one | 3 retrogenes | |
| Canis familiaris | ENSCAFG00000006395 | possible_ortholog | 6 retrogenes | |
| Callithrix jacchus | ENSCJAG00000002705 | possible_ortholog | 2 retrogenes | |
| Felis catus | ENSFCAG00000029966 | possible_ortholog | 4 retrogenes | |
| Loxodonta africana | ENSLAFG00000017426 | ortholog_one2one | 1 retrogene | |
| Pelodiscus sinensis | ENSPSIG00000016462 | ortholog_one2one | 2 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000012294 | ortholog_one2one | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000006837 | ortholog_one2one | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_eeur_241 | 77.14 | 82.35 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_eeur_465 | 76.54 | 94.12 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_eeur_467 | 94.19 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_eeur_636 | 83.75 | 92.94 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSEEUG00000013509 retrocopies