Parental gene: | SNRPF, ENSCAFG00000006395 |
| Aliases: | None |
| Description: | small nuclear ribonucleoprotein polypeptide F [Source:HGNC Symbol;Acc:11162] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 15:35692220..35698674(+) |
>ENSCAFG00000006395
AGTTTCTCCCGTCACGAGGGACGGACTACAGCTGGGTCGGCGGCGAGCGGCCTGCAGCGTTGGCTTGTGGTCGCAATGAG
TTTGCCTCTCAATCCGAAACCTTTTCTGAATGGATTAACAGGAAAGCCAGTAATGGTGAAACTGAAGTGGGGAATGGAGT
ACAAAGGCTACCTCGTATCTGTAGATGGCTATATGAACATGCAGCTTGCAAACACAGAAGAATACATAGATGGAGCGTTG
TCTGGACATTTGGGTGAAGTTTTAATAAGGTGTAATAATGTCCTTTATATCAGGGGTGTTGAAGAAGAGGAAGAAGATGG
AGAAATGAGAGAATAG
AGTTTCTCCCGTCACGAGGGACGGACTACAGCTGGGTCGGCGGCGAGCGGCCTGCAGCGTTGGCTTGTGGTCGCAATGAG
TTTGCCTCTCAATCCGAAACCTTTTCTGAATGGATTAACAGGAAAGCCAGTAATGGTGAAACTGAAGTGGGGAATGGAGT
ACAAAGGCTACCTCGTATCTGTAGATGGCTATATGAACATGCAGCTTGCAAACACAGAAGAATACATAGATGGAGCGTTG
TCTGGACATTTGGGTGAAGTTTTAATAAGGTGTAATAATGTCCTTTATATCAGGGGTGTTGAAGAAGAGGAAGAAGATGG
AGAAATGAGAGAATAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 3 .97 RPM |
| SRP017611_kidney | 14 .66 RPM |
| SRP017611_liver | 2 .54 RPM |
| SRP012049_cerebellum | 10 .96 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000002166 | possible_ortholog | 3 retrogenes | |
| Callithrix jacchus | ENSCJAG00000002705 | ortholog_one2one | 2 retrogenes | |
| Erinaceus europaeus | ENSEEUG00000013509 | possible_ortholog | 4 retrogenes | |
| Echinops telfairi | ENSETEG00000001558 | ortholog_one2one | 3 retrogenes | |
| Felis catus | ENSFCAG00000029966 | ortholog_one2one | 4 retrogenes | |
| Latimeria chalumnae | ENSLACG00000002456 | possible_ortholog | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000017426 | possible_ortholog | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000008091 | possible_ortholog | 3 retrogenes | |
| Pelodiscus sinensis | ENSPSIG00000016462 | possible_ortholog | 2 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000012294 | possible_ortholog | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000006837 | possible_ortholog | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_110 | 94.05 | 75.68 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cfam_372 | 52.38 | 75.68 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cfam_619 | 75.82 | 81.08 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cfam_742 | 57.14 | 69.37 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cfam_763 | 69.23 | 70.27 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cfam_1975 | 93.90 | 72.97 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCAFG00000006395 retrocopies