Parental gene:

SLC5A1, ENSG00000100170

Aliases:SLC5A1, D22S675, NAGT, SGLT1
Description:solute carrier family 5 (sodium/glucose cotransporter), member 1 [Source:HGNC Symbol;Acc:11036]
Organism:Human (Homo sapiens)
Coordinates:22:32439018..32509016(+)


>ENSG00000100170
ATGGACAGTAGCACCTGGAGCCCCAAGACCACCGCGGTCACCCGGCCTGTTGAGACCCACGAGCTCATTCGCAATGCAGC
CGATATCTCCATCATCGTTATCTACTTCGTGGTAGTGATGGCCGTCGGACTGTGGGCTATGTTTTCCACCAATCGTGGGA
CTGTTGGAGGCTTCTTCCTGGCAGGCCGAAGTATGGTGTGGTGGCCGATTGGAGCCTCCCTCTTTGCTAGTAACATTGGA
AGTGGCCACTTTGTGGGGCTGGCCGGGACTGGGGCAGCTTCAGGCATCGCCATTGGAGGCTTTGAATGGAATGCCCTGGT
TTTGGTGGTTGTGCTGGGCTGGCTGTTTGTCCCCATCTATATTAAGGCTGGGGTGGTGACAATGCCAGAGTACCTGAGGA
AGCGGTTTGGAGGCCAGCGGATCCAGGTCTACCTTTCCCTTCTGTCCCTGCTGCTCTACATTTTCACCAAGATCTCGGCA
GACATCTTCTCGGGGGCCATATTCATCAATCTGGCCTTAGGCCTGAATCTGTATTTAGCCATCTTTCTCTTATTGGCAAT
CACTGCCCTTTACACAATTACAGGGGGCCTGGCGGCGGTGATTTACACGGACACCTTGCAGACGGTGATCATGCTGGTGG
GGTCTTTAATCCTGACTGGGTTTGCTTTTCACGAAGTGGGAGGCTATGACGCCTTCATGGAAAAGTACATGAAAGCCATT
CCAACCATAGTGTCTGATGGCAACACCACCTTTCAGGAAAAATGCTACACTCCAAGGGCCGACTCCTTCCACATCTTCCG
AGATCCCCTCACGGGAGACCTCCCATGGCCTGGGTTCATCTTTGGGATGTCCATCCTTACCTTGTGGTACTGGTGCACAG
ATCAGGTCATTGTGCAGCGCTGCCTCTCAGCCAAGAATATGTCTCACGTGAAGGGTGGCTGCATCCTGTGTGGGTATCTA
AAGCTGATGCCCATGTTCATCATGGTGATGCCAGGAATGATCAGCCGCATTCTGTACACAGAAAAAATTGCCTGTGTCGT
CCCTTCAGAATGTGAGAAATATTGCGGTACCAAGGTTGGCTGTACCAACATCGCCTATCCAACCTTAGTGGTGGAGCTCA
TGCCCAATGGACTGCGAGGCCTGATGCTATCAGTCATGCTGGCCTCCCTCATGAGCTCCCTGACCTCCATCTTCAACAGC
GCCAGCACCCTCTTCACCATGGACATCTACGCCAAGGTCCGCAAGAGAGCATCTGAGAAAGAGCTCATGATTGCCGGAAG
GTTGTTTATCCTGGTGCTGATTGGCATCAGCATCGCCTGGGTGCCCATTGTGCAGTCAGCACAAAGTGGGCAACTCTTCG
ATTACATCCAGTCCATCACCAGTTACTTGGGACCACCCATTGCGGCTGTCTTCCTGCTTGCTATTTTCTGGAAGAGAGTC
AATGAGCCAGGAGCCTTTTGGGGACTGATCCTAGGACTTCTGATTGGGATTTCACGTATGATTACTGAGTTTGCTTATGG
AACCGGGAGCTGCATGGAGCCCAGCAACTGTCCCACGATTATCTGTGGGGTGCACTACTTGTACTTTGCCATTATCCTCT
TCGCCATTTCTTTCATCACCATCGTGGTCATCTCCCTCCTCACCAAACCCATTCCGGATGTGCATCTCTACCGTCTGTGT
TGGAGCCTGCGCAACAGCAAAGAGGAGCGTATTGACCTGGATGCGGAAGAGGAGAACATCCAAGAAGGCCCTAAGGAGAC
CATTGAAATAGAAACACAAGTTCCTGAGAAGAAAAAAGGAATCTTCAGGAGAGCCTATGACCTATTTTGTGGGCTAGAGC
AGCACGGTGCACCCAAGATGACTGAGGAAGAGGAGAAAGCCATGAAGATGAAGATGACGGACACCTCTGAGAAGCCTTTG
TGGAGGACAGTGTTGAACGTCAATGGCATCATCCTGGTGACCGTGGCTGTCTTTTGCCATGCATATTTTGCCTGA

Library Parental gene expression (RPM)
bodymap2_adipose 0 .12 RPM
bodymap2_adrenal 0 .00 RPM
bodymap2_brain 0 .26 RPM
bodymap2_breast 12 .72 RPM
bodymap2_colon 2 .05 RPM
bodymap2_heart 313 .04 RPM
bodymap2_kidney 4 .41 RPM
bodymap2_liver 6 .32 RPM
bodymap2_lung 2 .97 RPM
bodymap2_lymph_node 0 .04 RPM
bodymap2_ovary 1 .27 RPM
bodymap2_prostate 2 .44 RPM
bodymap2_skeletal_muscle 0 .00 RPM
bodymap2_testis 6 .45 RPM
bodymap2_thyroid 0 .70 RPM
bodymap2_white_blood_cells 0 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Anas platyrhynchos ENSAPLG00000007944 ortholog_many2many 1 retrogene
retro_apla_5,
Choloepus hoffmanni ENSCHOG00000005940 ortholog_one2one 1 retrogene
retro_chof_2,
Callithrix jacchus ENSCJAG00000011369 ortholog_one2one 1 retrogene
retro_cjac_2033,
Ficedula albicollis ENSFALG00000007384 ortholog_one2many 1 retrogene
retro_falb_29,
Gallus gallus ENSGALG00000006728 ortholog_one2many 1 retrogene
retro_ggal_2,
Monodelphis domestica ENSMODG00000009915 ortholog_one2one 1 retrogene
retro_mdom_1324,
Mustela putorius furo ENSMPUG00000012749 ortholog_one2one 1 retrogene
retro_mputfur_837,
Oryctolagus cuniculus ENSOCUG00000017569 ortholog_one2one 1 retrogene
retro_ocun_1633,
Otolemur garnettii ENSOGAG00000003370 ortholog_one2one 1 retrogene
retro_ogar_2513,
Ochotona princeps ENSOPRG00000010458 ortholog_one2one 1 retrogene
retro_opri_6,
Procavia capensis ENSPCAG00000015157 ortholog_one2one 1 retrogene
retro_pcap_3,
Rattus norvegicus ENSRNOG00000017775 ortholog_one2one 1 retrogene
retro_rnor_794,
Ictidomys tridecemlineatus ENSSTOG00000006386 ortholog_one2one 1 retrogene
retro_itri_13,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_105 55.08 79.52
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Download FASTA sequences of all ENSG00000100170 retrocopies