Parental gene:

RA_M004_JSM9082BF, ENSOCUG00000017569

Aliases:None
Description:solute carrier family 5 (sodium/glucose cotransporter), member 1 (SLC5A1), mRNA [Source:RefSeq mRNA;Acc:NM_001101692]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:21:4393142..4471611(+)


>ENSOCUG00000017569
ATGGACAGCAGCACTTTGAGCCCCCTGGCCACCTCCACCGCGGCCCCCCTTGAGTCCTATGAGCGCATCCGCAATGCGGC
CGACATCTCCGTCATCGTCATCTACTTCTTGGTGGTGATGGCCGTCGGGCTGTGGGCTATGTTTTCCACCAATCGGGGGA
CGGTCGGAGGCTTCTTCTTGGCGGGTCGGAGTATGGTGTGGTGGCCGATCGGAGCCTCTCTGTTTGCCAGTAACATTGGA
AGTGGCCACTTTGTGGGGCTGGCCGGGACGGGAGCTGCTTCAGGCATTGCCACTGGGGGCTTTGAGTGGAACGCCCTGAT
CATGGTGGTCGTGCTGGGCTGGGTGTTTGTTCCCATTTACATCAGGGCTGGGGTGGTGACGATGCCAGAGTATCTGCAGA
AGCGGTTTGGAGGCAAGAGGATCCAGATCTACCTTTCCATTCTGTCCCTGTTGCTCTACATTTTTACCAAGATCTCGGCA
GACATATTTTCCGGAGCCATCTTCATCCAGCTGACCTTGGGCCTGGATATCTATGTGGCCATCATTATCTTATTGGTCAT
CACTGGGCTCTACACCATCACAGGGGGCTTGGCCGCTGTGATCTACACGGATACCTTGCAGACTGCCATCATGATGGTGG
GCTCTGTGATCCTGACTGGGTTCGCTTTTCACGAAGTAGGAGGGTACGAGGCCTTCACGGAGAAGTACATGCGAGCCATT
CCCAGCCAGATCTCCTACGGAAACACCTCCATCCCACAGAAGTGCTACACCCCAAGGGAAGACGCCTTCCACATCTTCCG
AGATGCCATCACTGGGGACATCCCCTGGCCCGGGCTCGTCTTTGGAATGAGCATCCTCACCCTTTGGTACTGGTGCACTG
ATCAGGTCATTGTGCAGCGTTGCCTGTCAGCCAAGAACTTGTCCCACGTGAAGGCCGGCTGCATTCTGTGTGGGTACCTG
AAGGTGATGCCTATGTTCCTCATAGTGATGATGGGGATGGTGAGCCGTATCCTGTACACAGACAAAGTTGCCTGCGTCGT
GCCCTCGGAATGTGAGAGATACTGTGGCACCAGGGTTGGCTGCACCAACATTGCCTTCCCAACCTTGGTGGTGGAGCTGA
TGCCCAATGGGCTGCGGGGCCTGATGCTGTCCGTCATGATGGCGTCTCTCATGAGCTCCCTGACCTCCATCTTCAACAGC
GCCAGCACCCTCTTCACCATGGACATCTACACCAAGATCCGGAAGAAAGCGTCTGAGAAGGAGCTCATGATCGCAGGAAG
GTTGTTCATGCTGTTCCTGATTGGCATCAGCATCGCCTGGGTGCCCATTGTGCAGTCAGCCCAGAGTGGGCAGCTCTTTG
ATTACATCCAGTCCATCACCAGTTACTTGGGGCCGCCCATTGCTGCTGTCTTCCTGCTTGCTATTTTCTGGAAGAGAGTC
AACGAGCCTGGAGCCTTTTGGGGGCTGGTCCTCGGATTTCTGATTGGGATTTCCCGTATGATTACCGAGTTTGCCTATGG
AACCGGGAGCTGCATGGAACCCAGCAACTGCCCCACGATTATTTGTGGTGTGCACTACTTGTACTTTGCCATCATCCTCT
TTGTCATTAGTATCATCACCGTTGTGGTTGTCTCCCTCTTCACCAAGCCCATTCCAGATGTGCATCTCTATCGTCTGTGC
TGGAGCCTACGTAATAGCAAAGAGGAGCGCATTGACTTGGATGCAGGAGAGGAAGACATTCAAGAAGCTCCAGAGGAGGC
CACTGACACAGAAGTTCCTAAGAAGAAGAAAGGATTCTTCAGGCGGGCCTATGACCTGTTTTGTGGGCTGGACCAGGATA
AGGGACCCAAGATGACCAAGGAGGAGGAGGCTGCCATGAAGCTGAAGCTCACAGACACCTCCGAGCACCCTCTGTGGAGG
ACCGTGGTGAACATCAACGGTGTCATCTTGCTGGCCGTGGCTGTCTTCTGCTACGCGTACTTTGCCTGA

Library Parental gene expression (RPM)
SRP017611_liver 4 .32 RPM
SRP017611_kidney 160 .75 RPM
SRP017611_brain 0 .99 RPM



Species Parental gene accession Homology type Retrogenes number
Anas platyrhynchos ENSAPLG00000007944 ortholog_many2many 1 retrogene
retro_apla_5,
Choloepus hoffmanni ENSCHOG00000005940 ortholog_one2one 1 retrogene
retro_chof_2,
Callithrix jacchus ENSCJAG00000011369 ortholog_one2one 1 retrogene
retro_cjac_2033,
Ficedula albicollis ENSFALG00000007384 ortholog_one2many 1 retrogene
retro_falb_29,
Homo sapiens ENSG00000100170 ortholog_one2one 1 retrogene
retro_hsap_105,
Gallus gallus ENSGALG00000006728 ortholog_one2many 1 retrogene
retro_ggal_2,
Monodelphis domestica ENSMODG00000009915 ortholog_one2one 1 retrogene
retro_mdom_1324,
Mustela putorius furo ENSMPUG00000012749 ortholog_one2one 1 retrogene
retro_mputfur_837,
Otolemur garnettii ENSOGAG00000003370 ortholog_one2one 1 retrogene
retro_ogar_2513,
Ochotona princeps ENSOPRG00000010458 ortholog_one2one 1 retrogene
retro_opri_6,
Procavia capensis ENSPCAG00000015157 ortholog_one2one 1 retrogene
retro_pcap_3,
Rattus norvegicus ENSRNOG00000017775 ortholog_one2one 1 retrogene
retro_rnor_794,
Ictidomys tridecemlineatus ENSSTOG00000006386 ortholog_one2one 1 retrogene
retro_itri_13,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_1633 53.30 81.87
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Download FASTA sequences of all ENSOCUG00000017569 retrocopies