Parental gene:

Slc5a1, ENSRNOG00000017775

Aliases:Slc5a1, SGLT1
Description:Sodium/glucose cotransporter 1 [Source:UniProtKB/Swiss-Prot;Acc:P53790]
Organism:Rat (Rattus norvegicus)
Coordinates:14:83595064..83660489(-)


>ENSRNOG00000017775
ATGGACAGTAGCACCTTGAGCCCCGCTGTTACTGCCACCGATGCACCCATCCAGTCCTATGAGCGCATTCGCAATGCGGC
TGACATATCAGTCATCGTCATCTACTTCGTGGTGGTGATGGCTGTCGGGCTGTGGGCCATGTTTTCCACTAATCGTGGGA
CTGTTGGAGGCTTCTTCCTGGCAGGCCGAAGTATGGTGTGGTGGCCGATTGGAGCCTCTCTCTTTGCCAGTAACATCGGA
AGTGGTCACTTTGTGGGGCTGGCGGGCACAGGAGCAGCCGCAGGCATTGCCATGGGTGGCTTCGAATGGAACGCCTTGGT
GTTCGTGGTCGTGCTGGGGTGGCTTTTTGTCCCTATTTACATCAAGGCTGGGGTGGTGACGATGCCGGAGTATCTGCGGA
AGCGATTTGGAGGCAAGCGGATCCAGATCTACCTTTCCGTTCTGTCCCTGCTCCTCTACATCTTTACCAAGATCTCAGCA
GACATCTTCTCTGGGGCTATATTCATCAATCTGGCCTTGGGCCTGGATATATACCTGGCCATTTTCATCCTGCTGGCCAT
CACCGCCCTTTACACCATCACAGGGGGACTGGCAGCAGTAATTTACACAGACACCTTGCAGACTGCGATCATGCTGGTGG
GATCTTTTATCCTGACTGGGTTTGCTTTCCGAGAAGTAGGAGGGTATGAGGCCTTCATGGATAAGTACATGAAAGCTATT
CCAACTTTGGTTTCTGATGGAAACATAACCGTCAAAGAAGAATGTTACACACCCAGGGCCGACTCGTTCCACATATTCCG
AGACCCCATTACGGGGGACATGCCATGGCCTGGGCTCATCTTCGGCCTGTCCATCCTCGCCCTGTGGTACTGGTGTACGG
ATCAGGTCATTGTGCAGCGATGCCTCTCGGCCAAGAACATGTCTCACGTGAAGGCTGGCTGTACCCTGTGTGGCTATCTG
AAGCTACTGCCTATGTTCCTCATGGTGATGCCCGGAATGATCAGCCGGATTCTATACACAGACAAAATCGCCTGTGTCCT
CCCCTCAGAATGTAAGAAATACTGCGGCACCCCAGTGGGCTGTACCAACATCGCCTACCCAACACTGGTGGTGGAACTCA
TGCCTAACGGACTTCGAGGCCTGATGCTGTCCGTCATGATGGCTTCCCTCATGAGCTCCTTGACCTCCATCTTCAACAGC
GCCAGTACTCTCTTCACCATGGACATCTACACCAAGATCCGGAAGGGTGCATCGGAGAAGGAGCTCATGATTGCAGGAAG
GTTGTTCATCCTCGTGCTGATTGGCATCAGCATTGCCTGGGTGCCCATTGTGCAGTCTGCCCAAAGCGGGCAGCTCTTTG
ACTACATCCAGTCCATCACCAGTTACCTGGGGCCACCCATTGCAGCCGTCTTCCTGCTGGCTATTTTCTGCAAGAGAGTC
AATGAACCGGGAGCCTTCTGGGGACTGATTCTCGGCTTCCTGATTGGAATCTCCCGTATGATCACTGAGTTTGCCTACGG
AACTGGAAGCTGCATGGAGCCCAGCAACTGCCCCAAGATCATCTGCGGGGTCCACTATCTGTACTTTGCCATCATCCTCT
TCGCTATCAGCGTCGTCACCGTCTTGGTCATCTCCCTCCTCACCAAGCCCATCCCAGACGTGCACCTGTACCGTCTGTGC
TGGAGTCTACGTAACAGCACAGAAGAGCGCATCGACCTGGATGCAGGAGAGGAGGAGCCCGTCGAGGAGGACCCTAAAGA
TACCATTGAAATAGATGCAGAAGCCCCCCAGAAGGAGAAGGGGTGCTTCAGGAAGGCATATGACCTGTTCTGTGGGCTGG
ACCAGGATAAAGGACCGAAGATGACTAAGGAAGAGGAGGAAGCTATGAAGCTGAAGATGACGGACACTTCCGAGAAGCCC
TTGTGGAGGACAGTGGTGAACATCAACGGCATCATCCTCCTGGCAGTGGCTGTCTTCTGCCACGCCTATTTTGCCTGA

Library Parental gene expression (RPM)
SRP017611_liver 0 .67 RPM
SRP017611_kidney 44 .03 RPM
SRP017611_brain 0 .07 RPM



Species Parental gene accession Homology type Retrogenes number
Anas platyrhynchos ENSAPLG00000007944 ortholog_many2many 1 retrogene
retro_apla_5,
Choloepus hoffmanni ENSCHOG00000005940 ortholog_one2one 1 retrogene
retro_chof_2,
Callithrix jacchus ENSCJAG00000011369 ortholog_one2one 1 retrogene
retro_cjac_2033,
Ficedula albicollis ENSFALG00000007384 ortholog_one2many 1 retrogene
retro_falb_29,
Homo sapiens ENSG00000100170 ortholog_one2one 1 retrogene
retro_hsap_105,
Gallus gallus ENSGALG00000006728 ortholog_one2many 1 retrogene
retro_ggal_2,
Monodelphis domestica ENSMODG00000009915 ortholog_one2one 1 retrogene
retro_mdom_1324,
Mustela putorius furo ENSMPUG00000012749 ortholog_one2one 1 retrogene
retro_mputfur_837,
Oryctolagus cuniculus ENSOCUG00000017569 ortholog_one2one 1 retrogene
retro_ocun_1633,
Otolemur garnettii ENSOGAG00000003370 ortholog_one2one 1 retrogene
retro_ogar_2513,
Ochotona princeps ENSOPRG00000010458 ortholog_one2one 1 retrogene
retro_opri_6,
Procavia capensis ENSPCAG00000015157 ortholog_one2one 1 retrogene
retro_pcap_3,
Ictidomys tridecemlineatus ENSSTOG00000006386 ortholog_one2one 1 retrogene
retro_itri_13,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_794 54.14 79.40
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Download FASTA sequences of all ENSRNOG00000017775 retrocopies