Parental gene:

RPS12, ENSG00000112306

Aliases:None
Description:ribosomal protein S12 [Source:HGNC Symbol;Acc:10385]
Organism:Human (Homo sapiens)
Coordinates:6:133135579..133138703(+)


>ENSG00000112306
ATGGCCGAGGAAGGCATTGCTGCTGGAGGTGTAATGGACGTTAATACTGCTTTACAAGAGGTTCTGAAGACTGCCCTCAT
CCACGATGGCCTAGCACGTGGAATTCGCGAAGCTGCCAAAGCCTTAGACAAGCGCCAAGCCCATCTTTGTGTGCTTGCAT
CCAACTGTGATGAGCCTATGTATGTCAAGTTGGTGGAGGCCCTTTGTGCTGAACACCAAATCAACCTAATTAAGGTTGAT
GACAACAAGAAACTAGGAGAATGGGTAGGCCTTTGTAAAATTGACAGAGAGGGGAAACCCCGTAAAGTGGTTGGTTGCAG
TTGTGTAGTAGTTAAGGACTATGGCAAGGAGTCTCAGGCCAAGGATGTCATTGAAGAGTATTTCAAATGCAAGAAATGA

Library Parental gene expression (RPM)
bodymap2_liver 264 .93 RPM
bodymap2_lung 735 .85 RPM
bodymap2_breast 380 .28 RPM
bodymap2_adipose 474 .15 RPM
bodymap2_adrenal 588 .01 RPM
bodymap2_skeletal_muscle 323 .85 RPM
bodymap2_thyroid 378 .38 RPM
bodymap2_prostate 838 .38 RPM
bodymap2_colon 575 .74 RPM
bodymap2_testis 481 .66 RPM
bodymap2_brain 195 .61 RPM
bodymap2_heart 153 .01 RPM
bodymap2_white_blood_cells 1280 .71 RPM
bodymap2_lymph_node 1024 .27 RPM
bodymap2_ovary 823 .31 RPM
bodymap2_kidney 295 .86 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000010479 ortholog_one2one 1 retrogene
retro_acar_102,
Ailuropoda melanoleuca ENSAMEG00000008015 ortholog_one2many 2 retrogenes
retro_amel_79, retro_amel_92,
Bos taurus ENSBTAG00000001360 possible_ortholog 7 retrogenes
retro_btau_106, retro_btau_1097, retro_btau_1306, retro_btau_1495, retro_btau_1514, retro_btau_1630, retro_btau_1802,
Callithrix jacchus ENSCJAG00000002865 possible_ortholog 34 retrogenes
retro_cjac_1038, retro_cjac_1044, retro_cjac_1205, retro_cjac_1291, retro_cjac_1528, retro_cjac_1602, retro_cjac_1778, retro_cjac_1994, retro_cjac_2039, retro_cjac_2058, retro_cjac_2065, retro_cjac_2101, retro_cjac_2112, retro_cjac_2155, retro_cjac_2337, retro_cjac_2406, retro_cjac_2421, retro_cjac_2461, retro_cjac_2681, retro_cjac_2694, retro_cjac_2858, retro_cjac_301, retro_cjac_3310, retro_cjac_4149, retro_cjac_427, retro_cjac_466, retro_cjac_494, retro_cjac_592, retro_cjac_773, retro_cjac_805, retro_cjac_806, retro_cjac_807, retro_cjac_836, retro_cjac_977,
Cavia porcellus ENSCPOG00000000429 possible_ortholog 4 retrogenes
retro_cpor_1096, retro_cpor_304, retro_cpor_32, retro_cpor_380,
Equus caballus ENSECAG00000001599 possible_ortholog 8 retrogenes
retro_ecab_1012, retro_ecab_1131, retro_ecab_133, retro_ecab_744, retro_ecab_80, retro_ecab_828, retro_ecab_875, retro_ecab_959,
Echinops telfairi ENSETEG00000006854 possible_ortholog 14 retrogenes
retro_etel_1129, retro_etel_1512, retro_etel_1580, retro_etel_2016, retro_etel_205, retro_etel_2082, retro_etel_2099, retro_etel_2169, retro_etel_26, retro_etel_280, retro_etel_29, retro_etel_55, retro_etel_578, retro_etel_915,
Felis catus ENSFCAG00000028402 possible_ortholog 7 retrogenes
retro_fcat_1084, retro_fcat_1314, retro_fcat_1446, retro_fcat_1880, retro_fcat_537, retro_fcat_664, retro_fcat_796,
Gorilla gorilla ENSGGOG00000012234 possible_ortholog 22 retrogenes
retro_ggor_1164, retro_ggor_1287, retro_ggor_1322, retro_ggor_139, retro_ggor_1426, retro_ggor_1441, retro_ggor_1686, retro_ggor_1861, retro_ggor_1894, retro_ggor_2115, retro_ggor_2241, retro_ggor_2261, retro_ggor_2339, retro_ggor_2456, retro_ggor_2489, retro_ggor_2680, retro_ggor_3076, retro_ggor_530, retro_ggor_595, retro_ggor_673, retro_ggor_724, retro_ggor_971,
Gadus morhua ENSGMOG00000019455 ortholog_one2one 1 retrogene
retro_gmor_11,
Microcebus murinus ENSMICG00000005252 possible_ortholog 5 retrogenes
retro_mmur_1260, retro_mmur_1527, retro_mmur_391, retro_mmur_491, retro_mmur_98,
Myotis lucifugus ENSMLUG00000001137 possible_ortholog 5 retrogenes
retro_mluc_1479, retro_mluc_1552, retro_mluc_1987, retro_mluc_1988, retro_mluc_582,
Macaca mulatta ENSMMUG00000013237 ortholog_one2one 1 retrogene
retro_mmul_12,
Monodelphis domestica ENSMODG00000017520 ortholog_one2one 1 retrogene
retro_mdom_779,
Mustela putorius furo ENSMPUG00000014771 possible_ortholog 1 retrogene
retro_mputfur_6,
Mus musculus ENSMUSG00000061983 ortholog_one2one 1 retrogene
retro_mmus_36,
Pelodiscus sinensis ENSPSIG00000003457 ortholog_one2one 1 retrogene
retro_psin_52,
Rattus norvegicus ENSRNOG00000016411 possible_ortholog 5 retrogenes
retro_rnor_177, retro_rnor_186, retro_rnor_241, retro_rnor_295, retro_rnor_300,
Sorex araneus ENSSARG00000003170 possible_ortholog 2 retrogenes
retro_sara_356, retro_sara_8,
Sarcophilus harrisii ENSSHAG00000008905 possible_ortholog 6 retrogenes
retro_shar_187, retro_shar_226, retro_shar_475, retro_shar_492, retro_shar_621, retro_shar_671,
Tarsius syrichta ENSTSYG00000010097 possible_ortholog 24 retrogenes
retro_tsyr_1010, retro_tsyr_102, retro_tsyr_1123, retro_tsyr_1188, retro_tsyr_129, retro_tsyr_1313, retro_tsyr_1345, retro_tsyr_1398, retro_tsyr_1486, retro_tsyr_1668, retro_tsyr_1955, retro_tsyr_1993, retro_tsyr_205, retro_tsyr_249, retro_tsyr_303, retro_tsyr_419, retro_tsyr_453, retro_tsyr_556, retro_tsyr_645, retro_tsyr_733, retro_tsyr_764, retro_tsyr_801, retro_tsyr_970, retro_tsyr_99,
Tursiops truncatus ENSTTRG00000000609 ortholog_one2one 11 retrogenes
retro_ttru_1290, retro_ttru_206, retro_ttru_233, retro_ttru_304, retro_ttru_559, retro_ttru_64, retro_ttru_667, retro_ttru_727, retro_ttru_787, retro_ttru_955, retro_ttru_990,
Vicugna pacos ENSVPAG00000011504 possible_ortholog 3 retrogenes
retro_vpac_133, retro_vpac_267, retro_vpac_339,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_599 86.02 69.70
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2. retro_hsap_661 74.10 100.00
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3. retro_hsap_702 84.95 69.70
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4. retro_hsap_824 72.18 100.00
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5. retro_hsap_895 96.97 100.00
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6. retro_hsap_1241 87.97 100.00
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7. retro_hsap_1522 87.22 100.00
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8. retro_hsap_1738 73.04 87.12
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9. retro_hsap_1771 77.17 68.94
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10. retro_hsap_1797 93.28 99.24
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11. retro_hsap_1962 89.63 100.00
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12. retro_hsap_1992 66.41 94.70
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13. retro_hsap_2249 91.67 100.00
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14. retro_hsap_2264 84.44 100.00
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15. retro_hsap_2667 62.22 100.00
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16. retro_hsap_2722 72.29 62.12
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17. retro_hsap_3043 91.73 100.00
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18. retro_hsap_3079 76.12 100.00
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19. retro_hsap_3249 56.41 56.82
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20. retro_hsap_3347 88.37 64.39
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21. retro_hsap_3428 69.89 68.94
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22. retro_hsap_3467 66.42 100.00
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23. retro_hsap_3640 73.88 100.00
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24. retro_hsap_3680 89.47 100.00
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25. retro_hsap_3994 59.34 68.18
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26. retro_hsap_4130 68.60 64.39
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Download FASTA sequences of all ENSG00000112306 retrocopies