Parental gene:

ENSFCAG00000028402

Aliases:None
Description:None
Organism:Cat (Felis catus)
Coordinates:B2:122042278..122047174(+)


>ENSFCAG00000028402
ATGGCCGAGGAAGGCATTGCTGCTGGAGGTGTAATGGACGTTAATACTGCTTTACAAGAGGTGCTGAAGACCGCCCTCAT
CCACGATGGCCTGGCACGTGGAATTCGCGAAGCTGCCAAAGCCTTAGACAAGCGCCAAGCCCATCTTTGTGTGCTTGCAT
CCAACTGCGATGAGCCTATGTATGTCAAGTTGGTGGAGGCCCTTTGTGCTGAGCACCAGATCAACCTAATTAAGGTTGAT
GACAACAAGAAACTAGGGGAATGGGTCGGTCTCTGTAAAATTGACAGGGAGGGAAAACCCCGTAAAGTGGTTGGTTGCAG
TTGTGTGGTGGTTAAGGTAAGTCCGTTTTTATCTCTGGGTTGA

Library Parental gene expression (RPM)
SRP017611_liver 178 .32 RPM
SRP017611_kidney 307 .83 RPM
SRP017611_brain 103 .18 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000010479 ortholog_one2many 1 retrogene
Ailuropoda melanoleuca ENSAMEG00000008015 possible_ortholog 2 retrogenes
Bos taurus ENSBTAG00000001360 possible_ortholog 7 retrogenes
Canis familiaris ENSCAFG00000000190 possible_ortholog 15 retrogenes
Callithrix jacchus ENSCJAG00000002865 possible_ortholog 34 retrogenes
Cavia porcellus ENSCPOG00000000429 possible_ortholog 4 retrogenes
Dasypus novemcinctus ENSDNOG00000006214 possible_ortholog 31 retrogenes
Equus caballus ENSECAG00000001599 possible_ortholog 8 retrogenes
Echinops telfairi ENSETEG00000006854 possible_ortholog 14 retrogenes
Homo sapiens ENSG00000112306 possible_ortholog 26 retrogenes
Gorilla gorilla ENSGGOG00000012234 possible_ortholog 22 retrogenes
Gadus morhua ENSGMOG00000019455 ortholog_one2many 1 retrogene
Loxodonta africana ENSLAFG00000007933 possible_ortholog 11 retrogenes
Macropus eugenii ENSMEUG00000004285 possible_ortholog 1 retrogene
Microcebus murinus ENSMICG00000005252 possible_ortholog 5 retrogenes
Myotis lucifugus ENSMLUG00000001137 possible_ortholog 5 retrogenes
Macaca mulatta ENSMMUG00000013237 possible_ortholog 1 retrogene
Monodelphis domestica ENSMODG00000017520 possible_ortholog 1 retrogene
Mustela putorius furo ENSMPUG00000014771 possible_ortholog 1 retrogene
Mus musculus ENSMUSG00000061983 possible_ortholog 1 retrogene
Nomascus leucogenys ENSNLEG00000014611 possible_ortholog 4 retrogenes
Oryctolagus cuniculus ENSOCUG00000001606 possible_ortholog 14 retrogenes
Otolemur garnettii ENSOGAG00000001309 possible_ortholog 20 retrogenes
Pongo abelii ENSPPYG00000017020 possible_ortholog 26 retrogenes
Pelodiscus sinensis ENSPSIG00000003457 ortholog_one2many 1 retrogene
Pan troglodytes ENSPTRG00000018618 possible_ortholog 25 retrogenes
Pteropus vampyrus ENSPVAG00000017201 possible_ortholog 12 retrogenes
Rattus norvegicus ENSRNOG00000016411 possible_ortholog 5 retrogenes
Sorex araneus ENSSARG00000003170 ortholog_one2many 2 retrogenes
Sarcophilus harrisii ENSSHAG00000008905 possible_ortholog 6 retrogenes
Sus scrofa ENSSSCG00000004177 possible_ortholog 8 retrogenes
Tarsius syrichta ENSTSYG00000010097 possible_ortholog 24 retrogenes
Tursiops truncatus ENSTTRG00000000609 possible_ortholog 11 retrogenes
Vicugna pacos ENSVPAG00000010082 ortholog_one2one 4 retrogenes
Vicugna pacos ENSVPAG00000011504 possible_ortholog 3 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_537 76.92 74.17
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2. retro_fcat_664 75.44 91.67
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3. retro_fcat_796 83.04 91.67
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4. retro_fcat_1084 71.68 93.33
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5. retro_fcat_1314 63.44 75.83
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6. retro_fcat_1446 64.21 77.50
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7. retro_fcat_1880 73.58 86.67
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Download FASTA sequences of all ENSFCAG00000028402 retrocopies