Parental gene:

ENSSHAG00000008905

Aliases:None
Description:None
Organism:Tasmanian devil (Sarcophilus harrisii)
Coordinates:GL856950.1:478989..482196(+)


>ENSSHAG00000008905
ATGGCCGAGGAAGGCATTGCTGCTGGAGGTGTAATGGACGTTAACACTGCTCTACAAGAAGTGCTGAAGACCGCACTCAT
CCACGATGGCTTAGCTCGTGGAATTCGTGAAGCTGCCAAAGCCTTGGACAAACGCCAAGCACATCTTTGTGTTCTTGCTT
CCAACTGTGATGAACCTATGTATGTAAAGTTGGTTGAGGCTCTGTGTGCTGAACACCAAATCAACTTGATCAAGGTTGAT
GACAACAAGAAGCTAGGTGAATGGGTAGGCCTCTGTAAAATTGACAGAGAGGGAAAACCCCGTAAAGTGGTTGGCTGCAG
TTGCGTAGTTGTTAAGGACTATGGCAAGGAATCTCAGGCCAAAGATGTCATCGAAGAATATTTTAAATGCAAGAAATGA

Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000010479 ortholog_one2many 1 retrogene
Ailuropoda melanoleuca ENSAMEG00000008015 possible_ortholog 2 retrogenes
Bos taurus ENSBTAG00000001360 possible_ortholog 7 retrogenes
Canis familiaris ENSCAFG00000000190 ortholog_one2one 15 retrogenes
Callithrix jacchus ENSCJAG00000002865 ortholog_one2one 34 retrogenes
Cavia porcellus ENSCPOG00000000429 possible_ortholog 4 retrogenes
Dasypus novemcinctus ENSDNOG00000006214 possible_ortholog 31 retrogenes
Equus caballus ENSECAG00000001599 possible_ortholog 8 retrogenes
Echinops telfairi ENSETEG00000006854 possible_ortholog 14 retrogenes
Felis catus ENSFCAG00000028402 possible_ortholog 7 retrogenes
Homo sapiens ENSG00000112306 possible_ortholog 26 retrogenes
Gorilla gorilla ENSGGOG00000012234 possible_ortholog 22 retrogenes
Gadus morhua ENSGMOG00000019455 ortholog_one2many 1 retrogene
Loxodonta africana ENSLAFG00000007933 possible_ortholog 11 retrogenes
Microcebus murinus ENSMICG00000005252 possible_ortholog 5 retrogenes
Myotis lucifugus ENSMLUG00000001137 possible_ortholog 5 retrogenes
Macaca mulatta ENSMMUG00000013237 possible_ortholog 1 retrogene
Monodelphis domestica ENSMODG00000017520 possible_ortholog 1 retrogene
Mustela putorius furo ENSMPUG00000014771 possible_ortholog 1 retrogene
Mus musculus ENSMUSG00000061983 possible_ortholog 1 retrogene
Nomascus leucogenys ENSNLEG00000014611 possible_ortholog 4 retrogenes
Oryctolagus cuniculus ENSOCUG00000001606 possible_ortholog 14 retrogenes
Otolemur garnettii ENSOGAG00000001309 possible_ortholog 20 retrogenes
Pongo abelii ENSPPYG00000017020 ortholog_one2one 26 retrogenes
Pelodiscus sinensis ENSPSIG00000003457 ortholog_one2many 1 retrogene
Pan troglodytes ENSPTRG00000018618 possible_ortholog 25 retrogenes
Pteropus vampyrus ENSPVAG00000017201 possible_ortholog 12 retrogenes
Rattus norvegicus ENSRNOG00000016411 possible_ortholog 5 retrogenes
Sorex araneus ENSSARG00000003170 possible_ortholog 2 retrogenes
Sus scrofa ENSSSCG00000004177 ortholog_one2one 8 retrogenes
Tarsius syrichta ENSTSYG00000010097 ortholog_one2one 24 retrogenes
Tursiops truncatus ENSTTRG00000000609 possible_ortholog 11 retrogenes
Vicugna pacos ENSVPAG00000010082 possible_ortholog 4 retrogenes
Vicugna pacos ENSVPAG00000011504 possible_ortholog 3 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_shar_187 70.65 68.94
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2. retro_shar_226 60.40 75.00
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3. retro_shar_475 83.70 100.00
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4. retro_shar_492 76.87 100.00
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5. retro_shar_621 82.19 53.79
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6. retro_shar_671 78.23 93.94
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Download FASTA sequences of all ENSSHAG00000008905 retrocopies