Parental gene:

RPS12, ENSBTAG00000001360

Aliases:None
Description:40S ribosomal protein S12 [Source:UniProtKB/Swiss-Prot;Acc:Q76I81]
Organism:Cow (Bos taurus)
Coordinates:9:71974859..71978200(+)


>ENSBTAG00000001360
ATGGCCGAGGAAGGCATTGCTGCTGGAGGTGTAATGGACGTTAATACTGCTCTGCAAGAGGTACTGAAGACCGCCCTCAT
CCACGATGGCTTAGCACGTGGAATTCGCGAAGCTGCGAAAGCTTTAGACAAGCGCCAAGCCCATCTGTGTGTGCTCGCAT
CCAACTGTGATGAGCCTATGTATGTCAAGTTGGTGGAGGCCCTTTGTGCTGAGCATCAAATCAACCTGATTAAGGTTGAT
GACAACAAGAAACTAGGGGAATGGGTAGGCCTCTGTAAAATTGACAGAGAGGGGAAACCTCGTAAAGTGGTTGGTTGCAG
TTGTGTGGTGGTTAAGGACTATGGCAAAGAATCTCAGGCCAAGGATGTCATCGAGGAGTACTTCAAATGCAAGAAATGA

Library Parental gene expression (RPM)
SRP017611_brain 124 .61 RPM
SRP017611_kidney 325 .76 RPM
SRP017611_liver 165 .51 RPM
ERP005899_muscle 1823 .18 RPM
ERP005899_liver 98 .84 RPM
SRP030211_testis 78 .42 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000010479 ortholog_one2many 1 retrogene
Ailuropoda melanoleuca ENSAMEG00000008015 possible_ortholog 2 retrogenes
Canis familiaris ENSCAFG00000000190 possible_ortholog 15 retrogenes
Callithrix jacchus ENSCJAG00000002865 possible_ortholog 34 retrogenes
Cavia porcellus ENSCPOG00000000429 ortholog_one2one 4 retrogenes
Dasypus novemcinctus ENSDNOG00000006214 ortholog_one2one 31 retrogenes
Equus caballus ENSECAG00000001599 ortholog_one2one 8 retrogenes
Echinops telfairi ENSETEG00000006854 ortholog_one2one 14 retrogenes
Felis catus ENSFCAG00000028402 possible_ortholog 7 retrogenes
Homo sapiens ENSG00000112306 possible_ortholog 26 retrogenes
Gorilla gorilla ENSGGOG00000012234 ortholog_one2one 22 retrogenes
Gadus morhua ENSGMOG00000019455 ortholog_one2many 1 retrogene
Loxodonta africana ENSLAFG00000007933 ortholog_one2one 11 retrogenes
Macropus eugenii ENSMEUG00000004285 possible_ortholog 1 retrogene
Microcebus murinus ENSMICG00000005252 possible_ortholog 5 retrogenes
Myotis lucifugus ENSMLUG00000001137 possible_ortholog 5 retrogenes
Macaca mulatta ENSMMUG00000013237 possible_ortholog 1 retrogene
Monodelphis domestica ENSMODG00000017520 possible_ortholog 1 retrogene
Mustela putorius furo ENSMPUG00000014771 ortholog_one2one 1 retrogene
Mus musculus ENSMUSG00000061983 possible_ortholog 1 retrogene
Nomascus leucogenys ENSNLEG00000014611 possible_ortholog 4 retrogenes
Oryctolagus cuniculus ENSOCUG00000001606 ortholog_one2one 14 retrogenes
Otolemur garnettii ENSOGAG00000001309 ortholog_one2one 20 retrogenes
Pongo abelii ENSPPYG00000017020 possible_ortholog 26 retrogenes
Pelodiscus sinensis ENSPSIG00000003457 ortholog_one2many 1 retrogene
Pan troglodytes ENSPTRG00000018618 ortholog_one2one 25 retrogenes
Pteropus vampyrus ENSPVAG00000017201 ortholog_one2one 12 retrogenes
Rattus norvegicus ENSRNOG00000016411 ortholog_one2one 5 retrogenes
Sorex araneus ENSSARG00000003170 possible_ortholog 2 retrogenes
Sarcophilus harrisii ENSSHAG00000008905 possible_ortholog 6 retrogenes
Sus scrofa ENSSSCG00000004177 possible_ortholog 8 retrogenes
Tarsius syrichta ENSTSYG00000010097 possible_ortholog 24 retrogenes
Tursiops truncatus ENSTTRG00000000609 possible_ortholog 11 retrogenes
Vicugna pacos ENSVPAG00000010082 possible_ortholog 4 retrogenes
Vicugna pacos ENSVPAG00000011504 possible_ortholog 3 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_106 84.85 100.00
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2. retro_btau_1097 91.73 100.00
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3. retro_btau_1306 68.00 54.55
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4. retro_btau_1495 93.23 100.00
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5. retro_btau_1514 73.68 100.00
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6. retro_btau_1630 69.67 91.67
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7. retro_btau_1802 56.67 65.91
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Download FASTA sequences of all ENSBTAG00000001360 retrocopies