Parental gene:

ENSCPOG00000000429

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_68:169413..171762(+)


>ENSCPOG00000000429
ATGGCCGAGGAAGGCATTGCTGCTGGAGGTGTAATGGACGTCAATACTGCTTTACAAGAGGTGCTGAAGACCGCCCTCAT
CCACGATGGCCTAGCACGCGGCATCCGCGAAGCTGCCAAAGCCTTAGACAAACGCCAAGCTCATCTTTGTGTGCTTGCAT
CCAACTGTGATGAGCCCATGTATGTAAAGTTAGTGGAGGCCCTTTGTGCTGAACACCAGATCAACCTCATTAAGGTTGAT
GACAACAAGAAACTAGGGGAATGGGTAGGCCTCTGTAAAATTGACCGAGAGGGGAAACCCCGCAAAGTGGTTGGTTGCAG
TTGTGTGGTGGTTAAGAAGGACTACGGCAAAGAATCTCAGGCCAAGGATGTAATTGAAGAATACTTTAAATGCAAGAAAT
GA

Library Parental gene expression (RPM)
SRP017611_liver 112 .78 RPM
SRP017611_kidney 149 .39 RPM
SRP017611_brain 77 .13 RPM
SRP040447_lung 294 .81 RPM
SRP040447_skeletal_muscle 267 .11 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000010479 ortholog_one2many 1 retrogene
Ailuropoda melanoleuca ENSAMEG00000008015 possible_ortholog 2 retrogenes
Bos taurus ENSBTAG00000001360 ortholog_one2one 7 retrogenes
Canis familiaris ENSCAFG00000000190 possible_ortholog 15 retrogenes
Callithrix jacchus ENSCJAG00000002865 possible_ortholog 34 retrogenes
Dasypus novemcinctus ENSDNOG00000006214 ortholog_one2one 31 retrogenes
Equus caballus ENSECAG00000001599 ortholog_one2one 8 retrogenes
Echinops telfairi ENSETEG00000006854 ortholog_one2one 14 retrogenes
Felis catus ENSFCAG00000028402 possible_ortholog 7 retrogenes
Homo sapiens ENSG00000112306 possible_ortholog 26 retrogenes
Gorilla gorilla ENSGGOG00000012234 ortholog_one2one 22 retrogenes
Gadus morhua ENSGMOG00000019455 ortholog_one2many 1 retrogene
Loxodonta africana ENSLAFG00000007933 ortholog_one2one 11 retrogenes
Macropus eugenii ENSMEUG00000004285 possible_ortholog 1 retrogene
Microcebus murinus ENSMICG00000005252 possible_ortholog 5 retrogenes
Myotis lucifugus ENSMLUG00000001137 possible_ortholog 5 retrogenes
Macaca mulatta ENSMMUG00000013237 possible_ortholog 1 retrogene
Monodelphis domestica ENSMODG00000017520 possible_ortholog 1 retrogene
Mustela putorius furo ENSMPUG00000014771 ortholog_one2one 1 retrogene
Mus musculus ENSMUSG00000061983 possible_ortholog 1 retrogene
Nomascus leucogenys ENSNLEG00000014611 possible_ortholog 4 retrogenes
Oryctolagus cuniculus ENSOCUG00000001606 ortholog_one2one 14 retrogenes
Otolemur garnettii ENSOGAG00000001309 ortholog_one2one 20 retrogenes
Pongo abelii ENSPPYG00000017020 possible_ortholog 26 retrogenes
Pelodiscus sinensis ENSPSIG00000003457 ortholog_one2many 1 retrogene
Pan troglodytes ENSPTRG00000018618 ortholog_one2one 25 retrogenes
Pteropus vampyrus ENSPVAG00000017201 ortholog_one2one 12 retrogenes
Rattus norvegicus ENSRNOG00000016411 ortholog_one2one 5 retrogenes
Sorex araneus ENSSARG00000003170 possible_ortholog 2 retrogenes
Sarcophilus harrisii ENSSHAG00000008905 possible_ortholog 6 retrogenes
Sus scrofa ENSSSCG00000004177 possible_ortholog 8 retrogenes
Tarsius syrichta ENSTSYG00000010097 possible_ortholog 24 retrogenes
Tursiops truncatus ENSTTRG00000000609 possible_ortholog 11 retrogenes
Vicugna pacos ENSVPAG00000010082 possible_ortholog 4 retrogenes
Vicugna pacos ENSVPAG00000011504 possible_ortholog 3 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_32 92.31 97.74
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2. retro_cpor_304 71.76 63.16
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3. retro_cpor_380 76.12 100.00
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4. retro_cpor_1096 62.10 91.73
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Download FASTA sequences of all ENSCPOG00000000429 retrocopies