Parental gene:

LSM6, ENSG00000164167

Aliases:LSM6, YDR378C
Description:LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Source:HGNC Symbol;Acc:17017]
Organism:Human (Homo sapiens)
Coordinates:4:147096836..147121152(+)


>ENSG00000164167
ATGAGTCTTCGGAAGCAAACCCCTAGTGACTTCTTAAAGCAAATCATCGGACGACCAGTTGTGGTAAAATTAAATTCTGG
AGTGGATTATCGAGGGGTCCTGGCTTGCCTGGATGGCTACATGAATATAGCCCTGGAGCAGACAGAAGAATATGTAAATG
GACAACTGAAGAATAAGTATGGGGATGCATTTATCCGAGGAAACAATGTGTTGTACATCAGTACACAGAAGAGACGGATG
TGA

Library Parental gene expression (RPM)
bodymap2_liver 6 .19 RPM
bodymap2_lung 16 .21 RPM
bodymap2_breast 19 .30 RPM
bodymap2_adipose 24 .37 RPM
bodymap2_adrenal 18 .50 RPM
bodymap2_skeletal_muscle 7 .95 RPM
bodymap2_thyroid 13 .69 RPM
bodymap2_prostate 16 .51 RPM
bodymap2_colon 19 .14 RPM
bodymap2_testis 31 .56 RPM
bodymap2_brain 9 .59 RPM
bodymap2_heart 5 .45 RPM
bodymap2_white_blood_cells 31 .32 RPM
bodymap2_lymph_node 13 .41 RPM
bodymap2_ovary 21 .38 RPM
bodymap2_kidney 8 .29 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000014060 ortholog_one2one 1 retrogene
retro_btau_861,
Cavia porcellus ENSCPOG00000015389 ortholog_one2one 1 retrogene
retro_cpor_368,
Dasypus novemcinctus ENSDNOG00000009322 ortholog_one2one 5 retrogenes
retro_dnov_1118, retro_dnov_176, retro_dnov_2092, retro_dnov_301, retro_dnov_664,
Homo sapiens ENSG00000139343 within_species_paralog 3 retrogenes
retro_hsap_125, retro_hsap_2487, retro_hsap_2645,
Gorilla gorilla ENSGGOG00000001310 ortholog_one2one 2 retrogenes
retro_ggor_1417, retro_ggor_1638,
Myotis lucifugus ENSMLUG00000026355 ortholog_one2one 1 retrogene
retro_mluc_1859,
Monodelphis domestica ENSMODG00000000526 ortholog_one2one 4 retrogenes
retro_mdom_1027, retro_mdom_1383, retro_mdom_1983, retro_mdom_621,
Nomascus leucogenys ENSNLEG00000005584 ortholog_one2one 2 retrogenes
retro_nleu_1275, retro_nleu_1479,
Otolemur garnettii ENSOGAG00000026665 ortholog_one2many 1 retrogene
retro_ogar_233,
Sus scrofa ENSSSCG00000009036 ortholog_one2one 2 retrogenes
retro_sscr_474, retro_sscr_475,
Tarsius syrichta ENSTSYG00000012759 ortholog_one2one 4 retrogenes
retro_tsyr_1332, retro_tsyr_1727, retro_tsyr_340, retro_tsyr_653,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_1948 75.61 100.00
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2. retro_hsap_2107 67.90 100.00
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Download FASTA sequences of all ENSG00000164167 retrocopies